Gene annotation
Transcriptome id Sobic.001G294500.1,Sobic.001G294500.2
Synonym DHS2, Sb01g028770
Functional annotation phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed
UniProt C5WRG8 , A0A1B6QMW9
Pfam PF01474
Panther DB PTHR21337 PTHR21337:SF3
NCBI CDD -
KEGG Orthology K01626; E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
Gene Ontology GO:0009073; aromatic amino acid family biosynthetic process GO:00038493-deoxy-7-phosphoheptulonate synthase activity


Orthologs (automatic annotation)
TAIR AT4G33510 : 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase
RAP-DB (Rice) LOC_Os10g41480.1 : phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ97844
Barley HORVU1Hr1G055370.1 , HORVU0Hr1G000490.1 , HORVU0Hr1G000490.2
Wheat TraesCS1D02G218300 , TraesCS1B02G229700
Populus -


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cDNA sequences
Sobic.001G294500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G131000 dynamin-2B, putative, expressed K01528: dynamin 1/3
2 Sobic.004G177900 - -
3 Sobic.003G151400 protein kinase, putative, expressed K13436: pto-interacting protein 1
4 Sobic.005G043300 - -
5 Sobic.003G246500 3-5 exonuclease domain-containing protein, putative, expressed -
6 Sobic.008G025400 ankyrin, putative, expressed -
7 Sobic.003G093100 cyclin-related protein, putative, expressed -
8 Sobic.005G204600 OsMADS68 - MADS-box family gene with MIKC , type-box, expressed -
9 Sobic.009G061601 - -
10 Sobic.001G165700 B3 DNA binding domain containing protein, expressed -
11 Sobic.001G212500 vacuolar protein sorting-associated protein 52, putative, expressed -
12 Sobic.003G445300 aquaporin protein, putative, expressed K09873: aquaporin TIP
13 Sobic.001G171300 UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
14 Sobic.001G261416 - K01858: INO1, myo-inositol-1-phosphate synthase
15 Sobic.004G100900 tetratricopeptide repeat domain containing protein, expressed -
16 Sobic.007G145500 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
17 Sobic.010G215000 fasciclin-like arabinogalactan precursor protein, putative, expressed -
18 Sobic.001G329200 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
19 Sobic.001G063300 CAMK_CAMK_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
20 Sobic.003G175950 - -


Gene co-expression network
sample Sobic001G294500 Sobic001G294500 Sobic007G131000 Sobic007G131000 Sobic001G294500--Sobic007G131000 Sobic004G177900 Sobic004G177900 Sobic001G294500--Sobic004G177900 Sobic003G151400 Sobic003G151400 Sobic001G294500--Sobic003G151400 Sobic005G043300 Sobic005G043300 Sobic001G294500--Sobic005G043300 Sobic003G246500 Sobic003G246500 Sobic001G294500--Sobic003G246500 Sobic008G025400 Sobic008G025400 Sobic001G294500--Sobic008G025400 Sobic003G093100 Sobic003G093100 Sobic001G294500--Sobic003G093100 Sobic005G204600 Sobic005G204600 Sobic001G294500--Sobic005G204600 Sobic009G061601 Sobic009G061601 Sobic001G294500--Sobic009G061601 Sobic007G131000--Sobic003G246500 Sobic005G040700 Sobic005G040700 Sobic007G131000--Sobic005G040700 Sobic004G100900 Sobic004G100900 Sobic007G131000--Sobic004G100900 Sobic003G175950 Sobic003G175950 Sobic007G131000--Sobic003G175950 Sobic010G051000 Sobic010G051000 Sobic007G131000--Sobic010G051000 Sobic001G332000 Sobic001G332000 Sobic007G131000--Sobic001G332000 Sobic001G329200 Sobic001G329200 Sobic007G131000--Sobic001G329200 Sobic001G269100 Sobic001G269100 Sobic007G131000--Sobic001G269100 Sobic001G171300 Sobic001G171300 Sobic007G131000--Sobic001G171300 Sobic002G088600 Sobic002G088600 Sobic004G177900--Sobic002G088600 Sobic004G177900--Sobic001G294500 Sobic004G177900--Sobic003G093100 Sobic004G177900--Sobic008G025400 Sobic004G328500 Sobic004G328500 Sobic004G177900--Sobic004G328500 Sobic004G177900--Sobic005G043300 Sobic004G177900--Sobic003G151400 Sobic004G177900--Sobic007G131000 Sobic004G177900--Sobic003G246500 Sobic003G151400--Sobic001G294500 Sobic001G109900 Sobic001G109900 Sobic003G151400--Sobic001G109900 Sobic003G151400--Sobic007G131000 Sobic003G151400--Sobic003G093100 Sobic003G151400--Sobic009G061601 Sobic003G151400--Sobic008G025400 Sobic006G205400 Sobic006G205400 Sobic003G151400--Sobic006G205400 Sobic005G092100 Sobic005G092100 Sobic003G151400--Sobic005G092100 Sobic002G254700 Sobic002G254700 Sobic003G151400--Sobic002G254700 Sobic007G160501 Sobic007G160501 Sobic005G043300--Sobic007G160501 Sobic001G246001 Sobic001G246001 Sobic005G043300--Sobic001G246001 Sobic005G214800 Sobic005G214800 Sobic005G043300--Sobic005G214800 Sobic003G445300 Sobic003G445300 Sobic005G043300--Sobic003G445300 Sobic002G414000 Sobic002G414000 Sobic005G043300--Sobic002G414000 Sobic003G351100 Sobic003G351100 Sobic005G043300--Sobic003G351100 Sobic009G110800 Sobic009G110800 Sobic005G043300--Sobic009G110800 Sobic010G215000 Sobic010G215000 Sobic005G043300--Sobic010G215000 Sobic008G125801 Sobic008G125801 Sobic005G043300--Sobic008G125801 Sobic003G246500--Sobic004G100900 Sobic010G091800 Sobic010G091800 Sobic003G246500--Sobic010G091800 Sobic001G269800 Sobic001G269800 Sobic003G246500--Sobic001G269800 Sobic002G053800 Sobic002G053800 Sobic003G246500--Sobic002G053800 Sobic009G203900 Sobic009G203900 Sobic003G246500--Sobic009G203900 Sobic004G293300 Sobic004G293300 Sobic003G246500--Sobic004G293300 Sobic008G154300 Sobic008G154300 Sobic003G246500--Sobic008G154300 Sobic001G306400 Sobic001G306400 Sobic003G246500--Sobic001G306400 Sobic007G222100 Sobic007G222100 Sobic003G246500--Sobic007G222100 Sobic008G025400--Sobic003G093100 Sobic008G025400--Sobic001G294500 Sobic003G111000 Sobic003G111000 Sobic008G025400--Sobic003G111000 Sobic008G025400--Sobic003G151400 Sobic008G025400--Sobic003G246500 Sobic003G164400 Sobic003G164400 Sobic008G025400--Sobic003G164400 Sobic008G025400--Sobic004G177900 Sobic008G025400--Sobic002G088600 Sobic008G025400--Sobic007G131000 Sobic003G093100--Sobic008G025400 Sobic003G093100--Sobic001G294500 Sobic003G093100--Sobic003G151400 Sobic003G093100--Sobic002G088600 Sobic003G093100--Sobic004G177900 Sobic003G093100--Sobic007G131000 Sobic003G093100--Sobic003G246500 Sobic003G093100--Sobic003G164400 Sobic003G093100--Sobic009G061601 Sobic008G043300 Sobic008G043300 Sobic005G204600--Sobic008G043300 Sobic001G092500 Sobic001G092500 Sobic005G204600--Sobic001G092500 Sobic001G287400 Sobic001G287400 Sobic005G204600--Sobic001G287400 Sobic007G145500 Sobic007G145500 Sobic005G204600--Sobic007G145500 Sobic008G053750 Sobic008G053750 Sobic005G204600--Sobic008G053750 Sobic005G204600--Sobic005G040700 Sobic005G204600--Sobic007G131000 Sobic005G204600--Sobic001G171300 Sobic001G130500 Sobic001G130500 Sobic005G204600--Sobic001G130500 Sobic009G061601--Sobic007G131000 Sobic007G215200 Sobic007G215200 Sobic009G061601--Sobic007G215200 Sobic009G061601--Sobic001G294500 Sobic009G061601--Sobic003G151400 Sobic009G061601--Sobic006G205400 Sobic009G061601--Sobic005G204600 Sobic001G063300 Sobic001G063300 Sobic009G061601--Sobic001G063300 Sobic010G207800 Sobic010G207800 Sobic009G061601--Sobic010G207800 Sobic001G261416 Sobic001G261416 Sobic009G061601--Sobic001G261416
Octagon: transcription factors


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