Gene annotation
Transcriptome id Sobic.005G204600.2,Sobic.005G204600.1
Synonym AGL65, Sb05g025970
Functional annotation OsMADS68 - MADS-box family gene with MIKC* type-box, expressed
UniProt A0A1B6PTQ0
Pfam PF00319
Panther DB PTHR11945 PTHR11945:SF156
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT1G18750 : AGAMOUS-like 65
RAP-DB (Rice) LOC_Os11g43740.1 : OsMADS68 - MADS-box family gene with MIKC* type-box, expressed
MaizeGDB (Corn) Zm00025a029192
Brachypodium PNT63073
Barley HORVU4Hr1G032440.9 , HORVU4Hr1G032440.8 , HORVU4Hr1G032440.7 , HORVU4Hr1G032440.6 , HORVU4Hr1G032440.5 , HORVU4Hr1G032440.4 , HORVU4Hr1G032440.3 , HORVU4Hr1G032440.2 , HORVU4Hr1G032440.1 , HORVU4Hr1G032440.22 , HORVU4Hr1G032440.23 , HORVU4Hr1G032440.20 , HORVU4Hr1G032440.21 , HORVU7Hr1G091210.4 , HORVU7Hr1G091210.5 , HORVU7Hr1G091210.2 , HORVU7Hr1G091210.3 , HORVU7Hr1G091210.1 , HORVU4Hr1G032440.17 , HORVU4Hr1G032440.16 , HORVU4Hr1G032440.15 , HORVU4Hr1G032440.14 , HORVU4Hr1G032440.13 , HORVU4Hr1G032440.12 , HORVU4Hr1G032440.11 , HORVU4Hr1G032440.10 , HORVU4Hr1G032440.19 , HORVU4Hr1G032440.18
Wheat TraesCS4A02G169000 , TraesCS4B02G150200 , TraesCS4B02G150200 , TraesCS4D02G147000 , TraesCS4D02G147000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G043300 - -
2 Sobic.001G092500 protein kinase domain containing protein, expressed -
3 Sobic.001G287400 VQ domain containing protein, putative, expressed -
4 Sobic.007G145500 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
5 Sobic.008G053750 - -
6 Sobic.005G040700 amino acid permease family protein, putative, expressed -
7 Sobic.007G131000 dynamin-2B, putative, expressed K01528: dynamin 1/3
8 Sobic.001G171300 UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
9 Sobic.001G130500 - -
10 Sobic.003G175950 - -
11 Sobic.010G040400 polygalacturonase, putative, expressed -
12 Sobic.005G191300 MBTB64 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
13 Sobic.009G075400 RALFL17 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
14 Sobic.001G329200 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
15 Sobic.001G332000 pollen allergen, putative, expressed -
16 Sobic.001G165700 B3 DNA binding domain containing protein, expressed -
17 Sobic.010G051000 "domain confirmed by Pfam database, expressed in flower, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
18 Sobic.006G005300 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
19 Sobic.001G261416 - K01858: INO1, myo-inositol-1-phosphate synthase
20 Sobic.007G222100 - -


Gene co-expression network
sample Sobic005G204600 Sobic005G204600 Sobic008G043300 Sobic008G043300 Sobic005G204600--Sobic008G043300 Sobic001G092500 Sobic001G092500 Sobic005G204600--Sobic001G092500 Sobic001G287400 Sobic001G287400 Sobic005G204600--Sobic001G287400 Sobic007G145500 Sobic007G145500 Sobic005G204600--Sobic007G145500 Sobic008G053750 Sobic008G053750 Sobic005G204600--Sobic008G053750 Sobic005G040700 Sobic005G040700 Sobic005G204600--Sobic005G040700 Sobic007G131000 Sobic007G131000 Sobic005G204600--Sobic007G131000 Sobic001G171300 Sobic001G171300 Sobic005G204600--Sobic001G171300 Sobic001G130500 Sobic001G130500 Sobic005G204600--Sobic001G130500 Sobic009G075400 Sobic009G075400 Sobic008G043300--Sobic009G075400 Sobic008G043300--Sobic008G053750 Sobic003G335200 Sobic003G335200 Sobic008G043300--Sobic003G335200 Sobic004G134000 Sobic004G134000 Sobic008G043300--Sobic004G134000 Sobic001G288400 Sobic001G288400 Sobic008G043300--Sobic001G288400 Sobic001G093100 Sobic001G093100 Sobic008G043300--Sobic001G093100 Sobic004G002800 Sobic004G002800 Sobic008G043300--Sobic004G002800 Sobic009G082900 Sobic009G082900 Sobic008G043300--Sobic009G082900 Sobic001G024900 Sobic001G024900 Sobic008G043300--Sobic001G024900 Sobic010G040400 Sobic010G040400 Sobic001G092500--Sobic010G040400 Sobic010G276100 Sobic010G276100 Sobic001G092500--Sobic010G276100 Sobic005G191300 Sobic005G191300 Sobic001G092500--Sobic005G191300 Sobic009G175400 Sobic009G175400 Sobic001G092500--Sobic009G175400 Sobic008G043200 Sobic008G043200 Sobic001G092500--Sobic008G043200 Sobic010G016200 Sobic010G016200 Sobic001G092500--Sobic010G016200 Sobic001G092500--Sobic008G043300 Sobic001G332000 Sobic001G332000 Sobic001G092500--Sobic001G332000 Sobic005G145400 Sobic005G145400 Sobic001G092500--Sobic005G145400 Sobic001G329200 Sobic001G329200 Sobic001G287400--Sobic001G329200 Sobic001G287400--Sobic001G171300 Sobic003G175950 Sobic003G175950 Sobic001G287400--Sobic003G175950 Sobic001G287400--Sobic001G332000 Sobic001G261416 Sobic001G261416 Sobic001G287400--Sobic001G261416 Sobic001G287400--Sobic001G130500 Sobic001G165700 Sobic001G165700 Sobic001G287400--Sobic001G165700 Sobic001G287400--Sobic005G040700 Sobic001G269100 Sobic001G269100 Sobic001G287400--Sobic001G269100 Sobic007G145500--Sobic001G165700 Sobic007G145500--Sobic001G171300 Sobic007G145500--Sobic001G287400 Sobic007G145500--Sobic001G261416 Sobic010G215000 Sobic010G215000 Sobic007G145500--Sobic010G215000 Sobic007G145500--Sobic001G329200 Sobic007G145500--Sobic003G175950 Sobic007G145500--Sobic001G130500 Sobic006G005300 Sobic006G005300 Sobic007G145500--Sobic006G005300 Sobic008G053750--Sobic009G075400 Sobic008G053750--Sobic008G043300 Sobic004G293300 Sobic004G293300 Sobic008G053750--Sobic004G293300 Sobic006G159000 Sobic006G159000 Sobic008G053750--Sobic006G159000 Sobic001G306400 Sobic001G306400 Sobic008G053750--Sobic001G306400 Sobic008G053750--Sobic001G288400 Sobic008G053750--Sobic001G024900 Sobic002G066300 Sobic002G066300 Sobic008G053750--Sobic002G066300 Sobic001G269800 Sobic001G269800 Sobic008G053750--Sobic001G269800 Sobic005G040700--Sobic003G175950 Sobic005G040700--Sobic001G332000 Sobic010G051000 Sobic010G051000 Sobic005G040700--Sobic010G051000 Sobic005G040700--Sobic001G130500 Sobic005G040700--Sobic001G329200 Sobic005G040700--Sobic001G269100 Sobic007G222100 Sobic007G222100 Sobic005G040700--Sobic007G222100 Sobic005G040700--Sobic001G287400 Sobic001G306500 Sobic001G306500 Sobic005G040700--Sobic001G306500 Sobic003G246500 Sobic003G246500 Sobic007G131000--Sobic003G246500 Sobic007G131000--Sobic005G040700 Sobic004G100900 Sobic004G100900 Sobic007G131000--Sobic004G100900 Sobic007G131000--Sobic003G175950 Sobic007G131000--Sobic010G051000 Sobic007G131000--Sobic001G332000 Sobic007G131000--Sobic001G329200 Sobic007G131000--Sobic001G269100 Sobic007G131000--Sobic001G171300 Sobic001G171300--Sobic001G165700 Sobic001G171300--Sobic001G329200 Sobic001G171300--Sobic001G287400 Sobic001G171300--Sobic001G261416 Sobic001G171300--Sobic003G175950 Sobic001G171300--Sobic001G130500 Sobic001G171300--Sobic010G215000 Sobic001G171300--Sobic007G145500 Sobic001G171300--Sobic001G332000 Sobic001G130500--Sobic003G175950 Sobic001G130500--Sobic001G329200 Sobic001G130500--Sobic001G332000 Sobic001G130500--Sobic005G040700 Sobic001G130500--Sobic001G171300 Sobic001G130500--Sobic001G287400 Sobic001G130500--Sobic010G051000 Sobic001G130500--Sobic001G269100 Sobic001G130500--Sobic001G165700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.