Gene annotation
Transcriptome id Sobic.006G005300.2,Sobic.006G005300.3
Synonym Sb06g000650
Functional annotation erythronate-4-phosphate dehydrogenase domain containing protein, expressed
UniProt A0A1B6PJC5
Pfam PF00389 PF02826
Panther DB PTHR10996 PTHR10996:SF147
NCBI CDD KOG0069; Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)
KEGG Orthology K15919; glyoxylate/hydroxypyruvate reductase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G12550 : D-isomer specific 2-hydroxyacid dehydrogenase family protein
RAP-DB (Rice) LOC_Os04g01674.1 : erythronate-4-phosphate dehydrogenase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045000
Brachypodium -
Barley -
Wheat TraesCS2A02G034800
Populus -


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cDNA sequences
Sobic.006G005300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G165700 B3 DNA binding domain containing protein, expressed -
2 Sobic.001G171300 UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
3 Sobic.001G287400 VQ domain containing protein, putative, expressed -
4 Sobic.010G215000 fasciclin-like arabinogalactan precursor protein, putative, expressed -
5 Sobic.001G329200 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
6 Sobic.003G175950 - -
7 Sobic.001G261416 - K01858: INO1, myo-inositol-1-phosphate synthase
8 Sobic.007G145500 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
9 Sobic.001G130500 - -
10 Sobic.003G445300 aquaporin protein, putative, expressed K09873: aquaporin TIP
11 Sobic.005G220400 pollen allergen, putative, expressed -
12 Sobic.002G082400 DUF567 domain containing protein, putative, expressed -
13 Sobic.010G090200 OsMADS63 - MADS-box family gene with MIKC , type-box, expressed -
14 Sobic.001G269100 lysosomal alpha-mannosidase precursor, putative, expressed -
15 Sobic.001G332000 pollen allergen, putative, expressed -
16 Sobic.007G160501 - -
17 Sobic.005G040700 amino acid permease family protein, putative, expressed -
18 Sobic.005G220500 pollen allergen, putative, expressed -
19 Sobic.002G194300 expressed protein -
20 Sobic.003G351100 - -


Gene co-expression network
sample Sobic006G005300 Sobic006G005300 Sobic001G165700 Sobic001G165700 Sobic006G005300--Sobic001G165700 Sobic001G171300 Sobic001G171300 Sobic006G005300--Sobic001G171300 Sobic001G287400 Sobic001G287400 Sobic006G005300--Sobic001G287400 Sobic010G215000 Sobic010G215000 Sobic006G005300--Sobic010G215000 Sobic001G329200 Sobic001G329200 Sobic006G005300--Sobic001G329200 Sobic003G175950 Sobic003G175950 Sobic006G005300--Sobic003G175950 Sobic001G261416 Sobic001G261416 Sobic006G005300--Sobic001G261416 Sobic007G145500 Sobic007G145500 Sobic006G005300--Sobic007G145500 Sobic001G130500 Sobic001G130500 Sobic006G005300--Sobic001G130500 Sobic001G165700--Sobic001G171300 Sobic001G165700--Sobic010G215000 Sobic001G165700--Sobic003G175950 Sobic001G165700--Sobic001G329200 Sobic003G445300 Sobic003G445300 Sobic001G165700--Sobic003G445300 Sobic001G165700--Sobic001G287400 Sobic001G165700--Sobic001G261416 Sobic001G165700--Sobic007G145500 Sobic005G220400 Sobic005G220400 Sobic001G165700--Sobic005G220400 Sobic001G171300--Sobic001G165700 Sobic001G171300--Sobic001G329200 Sobic001G171300--Sobic001G287400 Sobic001G171300--Sobic001G261416 Sobic001G171300--Sobic003G175950 Sobic001G171300--Sobic001G130500 Sobic001G171300--Sobic010G215000 Sobic001G171300--Sobic007G145500 Sobic001G332000 Sobic001G332000 Sobic001G171300--Sobic001G332000 Sobic001G287400--Sobic001G329200 Sobic001G287400--Sobic001G171300 Sobic001G287400--Sobic003G175950 Sobic001G287400--Sobic001G332000 Sobic001G287400--Sobic001G261416 Sobic001G287400--Sobic001G130500 Sobic001G287400--Sobic001G165700 Sobic005G040700 Sobic005G040700 Sobic001G287400--Sobic005G040700 Sobic001G269100 Sobic001G269100 Sobic001G287400--Sobic001G269100 Sobic002G194300 Sobic002G194300 Sobic010G215000--Sobic002G194300 Sobic010G215000--Sobic001G165700 Sobic007G160501 Sobic007G160501 Sobic010G215000--Sobic007G160501 Sobic003G351100 Sobic003G351100 Sobic010G215000--Sobic003G351100 Sobic010G215000--Sobic005G220400 Sobic010G215000--Sobic001G171300 Sobic010G215000--Sobic003G445300 Sobic007G095333 Sobic007G095333 Sobic010G215000--Sobic007G095333 Sobic010G215000--Sobic001G261416 Sobic001G329200--Sobic003G175950 Sobic001G329200--Sobic001G332000 Sobic001G329200--Sobic001G287400 Sobic001G329200--Sobic001G171300 Sobic001G329200--Sobic001G130500 Sobic001G329200--Sobic005G040700 Sobic001G329200--Sobic001G261416 Sobic001G329200--Sobic001G165700 Sobic001G329200--Sobic001G269100 Sobic003G175950--Sobic001G329200 Sobic003G175950--Sobic001G130500 Sobic003G175950--Sobic001G332000 Sobic003G175950--Sobic005G040700 Sobic003G175950--Sobic001G171300 Sobic003G175950--Sobic001G287400 Sobic003G175950--Sobic001G269100 Sobic010G051000 Sobic010G051000 Sobic003G175950--Sobic010G051000 Sobic003G175950--Sobic001G165700 Sobic010G090200 Sobic010G090200 Sobic001G261416--Sobic010G090200 Sobic001G261416--Sobic001G171300 Sobic001G261416--Sobic001G287400 Sobic001G261416--Sobic001G329200 Sobic007G014000 Sobic007G014000 Sobic001G261416--Sobic007G014000 Sobic001G261416--Sobic001G165700 Sobic010G216100 Sobic010G216100 Sobic001G261416--Sobic010G216100 Sobic010G207800 Sobic010G207800 Sobic001G261416--Sobic010G207800 Sobic001G261416--Sobic010G215000 Sobic007G145500--Sobic001G165700 Sobic007G145500--Sobic001G171300 Sobic007G145500--Sobic001G287400 Sobic007G145500--Sobic001G261416 Sobic007G145500--Sobic010G215000 Sobic007G145500--Sobic001G329200 Sobic007G145500--Sobic003G175950 Sobic007G145500--Sobic001G130500 Sobic007G145500--Sobic006G005300 Sobic001G130500--Sobic003G175950 Sobic001G130500--Sobic001G329200 Sobic001G130500--Sobic001G332000 Sobic001G130500--Sobic005G040700 Sobic001G130500--Sobic001G171300 Sobic001G130500--Sobic001G287400 Sobic001G130500--Sobic010G051000 Sobic001G130500--Sobic001G269100 Sobic001G130500--Sobic001G165700
Octagon: transcription factors


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