Gene annotation
Transcriptome id Sobic.003G246500.1
Synonym Sb03g030280
Functional annotation 3-5 exonuclease domain-containing protein, putative, expressed
UniProt A0A1W0VYR7
Pfam PF01612
Panther DB PTHR13620 PTHR13620:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G12410 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os01g47180.1 : 3-5 exonuclease domain-containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G100900 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.010G091800 expressed protein -
3 Sobic.001G269800 - -
4 Sobic.002G053800 glycosyl hydrolase family 10 protein, putative, expressed -
5 Sobic.009G203900 profilin domain containing protein, expressed K05759: profilin
6 Sobic.004G293300 zinc-binding protein, putative, expressed -
7 Sobic.008G154300 flavin monooxygenase, putative, expressed -
8 Sobic.001G306400 expansin precursor, putative, expressed -
9 Sobic.007G222100 - -
10 Sobic.008G017500 - -
11 Sobic.005G142400 plant protein of unknown function domain containing protein, expressed -
12 Sobic.003G175600 plant protein of unknown function domain containing protein, expressed -
13 Sobic.001G024900 expressed protein -
14 Sobic.009G091300 - -
15 Sobic.003G394801 - -
16 Sobic.001G306200 expansin precursor, putative, expressed -
17 Sobic.001G306500 expansin precursor, putative, expressed -
18 Sobic.006G282100 DNA binding protein, putative, expressed -
19 Sobic.009G169500 DEFL4 - Defensin and Defensin-like DEFL family, expressed -
20 Sobic.010G051000 "domain confirmed by Pfam database, expressed in flower, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein


Gene co-expression network
sample Sobic003G246500 Sobic003G246500 Sobic004G100900 Sobic004G100900 Sobic003G246500--Sobic004G100900 Sobic010G091800 Sobic010G091800 Sobic003G246500--Sobic010G091800 Sobic001G269800 Sobic001G269800 Sobic003G246500--Sobic001G269800 Sobic002G053800 Sobic002G053800 Sobic003G246500--Sobic002G053800 Sobic009G203900 Sobic009G203900 Sobic003G246500--Sobic009G203900 Sobic004G293300 Sobic004G293300 Sobic003G246500--Sobic004G293300 Sobic008G154300 Sobic008G154300 Sobic003G246500--Sobic008G154300 Sobic001G306400 Sobic001G306400 Sobic003G246500--Sobic001G306400 Sobic007G222100 Sobic007G222100 Sobic003G246500--Sobic007G222100 Sobic001G024900 Sobic001G024900 Sobic004G100900--Sobic001G024900 Sobic004G100900--Sobic007G222100 Sobic001G306500 Sobic001G306500 Sobic004G100900--Sobic001G306500 Sobic001G288400 Sobic001G288400 Sobic004G100900--Sobic001G288400 Sobic010G051000 Sobic010G051000 Sobic004G100900--Sobic010G051000 Sobic004G100900--Sobic001G269800 Sobic004G100900--Sobic009G203900 Sobic004G100900--Sobic001G306400 Sobic001G093100 Sobic001G093100 Sobic004G100900--Sobic001G093100 Sobic010G091800--Sobic002G053800 Sobic010G091800--Sobic008G154300 Sobic010G091800--Sobic004G293300 Sobic010G091800--Sobic001G269800 Sobic003G394801 Sobic003G394801 Sobic010G091800--Sobic003G394801 Sobic008G017500 Sobic008G017500 Sobic010G091800--Sobic008G017500 Sobic001G306200 Sobic001G306200 Sobic010G091800--Sobic001G306200 Sobic005G142400 Sobic005G142400 Sobic010G091800--Sobic005G142400 Sobic003G175600 Sobic003G175600 Sobic010G091800--Sobic003G175600 Sobic001G269800--Sobic010G091800 Sobic001G269800--Sobic001G306400 Sobic001G269800--Sobic008G154300 Sobic001G269800--Sobic005G142400 Sobic009G091300 Sobic009G091300 Sobic001G269800--Sobic009G091300 Sobic001G269800--Sobic002G053800 Sobic001G269800--Sobic004G293300 Sobic001G269800--Sobic009G203900 Sobic001G269800--Sobic001G024900 Sobic002G053800--Sobic010G091800 Sobic002G053800--Sobic004G293300 Sobic002G053800--Sobic008G017500 Sobic002G053800--Sobic009G203900 Sobic002G053800--Sobic008G154300 Sobic002G053800--Sobic001G269800 Sobic002G053800--Sobic003G175600 Sobic006G282100 Sobic006G282100 Sobic002G053800--Sobic006G282100 Sobic002G053800--Sobic001G306400 Sobic009G203900--Sobic007G222100 Sobic009G203900--Sobic002G053800 Sobic009G203900--Sobic001G024900 Sobic009G203900--Sobic010G051000 Sobic009G203900--Sobic003G175600 Sobic009G203900--Sobic004G293300 Sobic009G203900--Sobic001G306500 Sobic009G203900--Sobic001G269800 Sobic009G203900--Sobic010G091800 Sobic004G293300--Sobic002G053800 Sobic004G293300--Sobic010G091800 Sobic004G293300--Sobic009G203900 Sobic004G293300--Sobic001G269800 Sobic004G293300--Sobic003G175600 Sobic004G293300--Sobic008G017500 Sobic004G293300--Sobic006G282100 Sobic004G293300--Sobic008G154300 Sobic004G293300--Sobic003G394801 Sobic008G154300--Sobic005G142400 Sobic008G154300--Sobic001G306200 Sobic008G154300--Sobic008G017500 Sobic008G154300--Sobic010G091800 Sobic008G154300--Sobic003G394801 Sobic008G154300--Sobic001G306400 Sobic009G169500 Sobic009G169500 Sobic008G154300--Sobic009G169500 Sobic008G154300--Sobic002G053800 Sobic008G154300--Sobic001G269800 Sobic001G306400--Sobic005G142400 Sobic001G306400--Sobic008G154300 Sobic006G159000 Sobic006G159000 Sobic001G306400--Sobic006G159000 Sobic001G306400--Sobic001G269800 Sobic001G306400--Sobic008G017500 Sobic001G306400--Sobic001G024900 Sobic001G306400--Sobic002G053800 Sobic001G306400--Sobic010G091800 Sobic001G306400--Sobic001G306500 Sobic007G222100--Sobic001G024900 Sobic007G222100--Sobic010G051000 Sobic007G222100--Sobic001G306500 Sobic007G222100--Sobic009G203900 Sobic007G222100--Sobic001G288400 Sobic007G222100--Sobic004G100900 Sobic007G222100--Sobic001G269800 Sobic005G040700 Sobic005G040700 Sobic007G222100--Sobic005G040700 Sobic007G222100--Sobic001G306400
Octagon: transcription factors


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