Gene annotation
Transcriptome id Sobic.004G279200.1,Sobic.004G279200.2
Synonym Sb04g031580
Functional annotation protein phosphatase 2C, putative, expressed
UniProt A0A194YS28
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF239
NCBI CDD KOG0700; Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase
KEGG Orthology K01102; pyruvate dehydrogenase phosphatase
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT5G06750 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os02g46080.1,LOC_Os02g46080.2 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a021565
Brachypodium KQJ84214
Barley -
Wheat TraesCS2A02G456300 , TraesCS2A02G456300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G279200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
2 Sobic.006G070564 - K01193: INV, beta-fructofuranosidase
3 Sobic.005G050400 syntaxin 6, putative, expressed -
4 Sobic.001G322400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
5 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase
6 Sobic.004G062200 expressed protein -
7 Sobic.006G267100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.006G171600 ZOS4-10 - C2H2 zinc finger protein, expressed -
9 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
10 Sobic.001G039100 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
11 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
12 Sobic.007G039200 MYB family transcription factor, putative, expressed -
13 Sobic.009G242600 ATPCME, putative, expressed K15889: prenylcysteine alpha-carboxyl methylesterase
14 Sobic.001G357400 emp24/gp25L/p24 family protein, putative, expressed -
15 Sobic.002G364700 ZOS7-11 - C2H2 zinc finger protein, expressed -
16 Sobic.001G503600 expressed protein -
17 Sobic.002G389600 transcription regulator, putative, expressed -
18 Sobic.002G170100 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
19 Sobic.006G189300 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
20 Sobic.002G404600 expressed protein -


Gene co-expression network
sample Sobic004G279200 Sobic004G279200 Sobic001G072000 Sobic001G072000 Sobic004G279200--Sobic001G072000 Sobic006G070564 Sobic006G070564 Sobic004G279200--Sobic006G070564 Sobic005G050400 Sobic005G050400 Sobic004G279200--Sobic005G050400 Sobic001G322400 Sobic001G322400 Sobic004G279200--Sobic001G322400 Sobic001G414650 Sobic001G414650 Sobic004G279200--Sobic001G414650 Sobic004G062200 Sobic004G062200 Sobic004G279200--Sobic004G062200 Sobic006G267100 Sobic006G267100 Sobic004G279200--Sobic006G267100 Sobic006G171600 Sobic006G171600 Sobic004G279200--Sobic006G171600 Sobic001G112600 Sobic001G112600 Sobic004G279200--Sobic001G112600 Sobic001G072000--Sobic001G322400 Sobic001G072000--Sobic005G050400 Sobic001G072000--Sobic001G112600 Sobic001G072000--Sobic004G279200 Sobic008G156600 Sobic008G156600 Sobic001G072000--Sobic008G156600 Sobic001G432200 Sobic001G432200 Sobic001G072000--Sobic001G432200 Sobic009G163100 Sobic009G163100 Sobic001G072000--Sobic009G163100 Sobic009G242200 Sobic009G242200 Sobic001G072000--Sobic009G242200 Sobic004G038500 Sobic004G038500 Sobic001G072000--Sobic004G038500 Sobic001G039100 Sobic001G039100 Sobic006G070564--Sobic001G039100 Sobic006G070564--Sobic004G279200 Sobic006G189300 Sobic006G189300 Sobic006G070564--Sobic006G189300 Sobic002G404600 Sobic002G404600 Sobic006G070564--Sobic002G404600 Sobic001G503600 Sobic001G503600 Sobic006G070564--Sobic001G503600 Sobic006G070564--Sobic001G414650 Sobic010G038300 Sobic010G038300 Sobic006G070564--Sobic010G038300 Sobic001G357400 Sobic001G357400 Sobic006G070564--Sobic001G357400 Sobic007G196700 Sobic007G196700 Sobic006G070564--Sobic007G196700 Sobic005G050400--Sobic001G112600 Sobic005G050400--Sobic001G072000 Sobic005G050400--Sobic008G156600 Sobic005G050400--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic005G050400--Sobic002G170100 Sobic003G441000 Sobic003G441000 Sobic005G050400--Sobic003G441000 Sobic004G007400 Sobic004G007400 Sobic005G050400--Sobic004G007400 Sobic005G144000 Sobic005G144000 Sobic005G050400--Sobic005G144000 Sobic005G050400--Sobic009G163100 Sobic001G322400--Sobic001G072000 Sobic010G073900 Sobic010G073900 Sobic001G322400--Sobic010G073900 Sobic001G322400--Sobic001G432200 Sobic008G166100 Sobic008G166100 Sobic001G322400--Sobic008G166100 Sobic001G322400--Sobic004G279200 Sobic007G048101 Sobic007G048101 Sobic001G322400--Sobic007G048101 Sobic009G202000 Sobic009G202000 Sobic001G322400--Sobic009G202000 Sobic009G238650 Sobic009G238650 Sobic001G322400--Sobic009G238650 Sobic003G407700 Sobic003G407700 Sobic001G322400--Sobic003G407700 Sobic001G414650--Sobic001G357400 Sobic001G414650--Sobic002G404600 Sobic008G055200 Sobic008G055200 Sobic001G414650--Sobic008G055200 Sobic002G381500 Sobic002G381500 Sobic001G414650--Sobic002G381500 Sobic007G070900 Sobic007G070900 Sobic001G414650--Sobic007G070900 Sobic006G105100 Sobic006G105100 Sobic001G414650--Sobic006G105100 Sobic004G054900 Sobic004G054900 Sobic001G414650--Sobic004G054900 Sobic009G110600 Sobic009G110600 Sobic001G414650--Sobic009G110600 Sobic001G337100 Sobic001G337100 Sobic001G414650--Sobic001G337100 Sobic004G062200--Sobic006G171600 Sobic004G062200--Sobic004G279200 Sobic004G062200--Sobic001G072000 Sobic004G062200--Sobic001G112600 Sobic004G062200--Sobic006G070564 Sobic010G052900 Sobic010G052900 Sobic004G062200--Sobic010G052900 Sobic004G062200--Sobic005G050400 Sobic006G115700 Sobic006G115700 Sobic004G062200--Sobic006G115700 Sobic007G063800 Sobic007G063800 Sobic004G062200--Sobic007G063800 Sobic008G071300 Sobic008G071300 Sobic006G267100--Sobic008G071300 Sobic006G267100--Sobic001G414650 Sobic002G340600 Sobic002G340600 Sobic006G267100--Sobic002G340600 Sobic003G114600 Sobic003G114600 Sobic006G267100--Sobic003G114600 Sobic002G283200 Sobic002G283200 Sobic006G267100--Sobic002G283200 Sobic006G267100--Sobic006G105100 Sobic004G042501 Sobic004G042501 Sobic006G267100--Sobic004G042501 Sobic002G380300 Sobic002G380300 Sobic006G267100--Sobic002G380300 Sobic003G290500 Sobic003G290500 Sobic006G267100--Sobic003G290500 Sobic006G171600--Sobic006G115700 Sobic010G142650 Sobic010G142650 Sobic006G171600--Sobic010G142650 Sobic006G171600--Sobic009G242200 Sobic004G290600 Sobic004G290600 Sobic006G171600--Sobic004G290600 Sobic006G204500 Sobic006G204500 Sobic006G171600--Sobic006G204500 Sobic010G003200 Sobic010G003200 Sobic006G171600--Sobic010G003200 Sobic003G297100 Sobic003G297100 Sobic006G171600--Sobic003G297100 Sobic006G171600--Sobic002G340600 Sobic002G364700 Sobic002G364700 Sobic006G171600--Sobic002G364700 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic001G112600--Sobic003G441000 Sobic001G112600--Sobic002G170100 Sobic001G112600--Sobic001G414650 Sobic003G244400 Sobic003G244400 Sobic001G112600--Sobic003G244400 Sobic001G112600--Sobic008G055200 Sobic004G358000 Sobic004G358000 Sobic001G112600--Sobic004G358000 Sobic001G112600--Sobic005G144000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.