Gene annotation
| Transcriptome id | Sobic.006G267100.2,Sobic.006G267100.3,Sobic.006G267100.1 |
|---|---|
| Synonym | Sb06g032930 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543) expressed protein |
| UniProt | A0A1Z5RFP4 , A0A1B6PP48 , A0A1B6PP33 |
| Pfam | PF04842 |
| Panther DB | PTHR31860 PTHR31860:SF4 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G23390 : Plant protein of unknown function (DUF639) |
|---|---|
| RAP-DB (Rice) | LOC_Os04g58100.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a054866 , Zm00025a024225 , Zm00025a057382 |
| Brachypodium | PNT62140 |
| Barley | HORVU2Hr1G119430.8 , HORVU2Hr1G119430.9 , HORVU2Hr1G119430.1 , HORVU2Hr1G119430.2 , HORVU2Hr1G119430.3 , HORVU2Hr1G119430.4 , HORVU2Hr1G119430.5 , HORVU2Hr1G119430.6 , HORVU2Hr1G119430.7 , HORVU7Hr1G111450.1 , HORVU2Hr1G119430.21 , HORVU2Hr1G119430.20 , HORVU2Hr1G119430.12 , HORVU2Hr1G119430.13 , HORVU2Hr1G119430.10 , HORVU2Hr1G119430.11 , HORVU2Hr1G119430.16 , HORVU2Hr1G119430.17 , HORVU2Hr1G119430.14 , HORVU2Hr1G119430.15 , HORVU2Hr1G119430.18 |
| Wheat | TraesCS2B02G591100 , TraesCS2B02G591100 , TraesCS2B02G591100 , TraesCS2D02G561500 , TraesCS2D02G561500 , TraesCS2A02G593200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G071300 | protein phosphatase 2C, putative, expressed | K17506: PPM1L, protein phosphatase 1L |
| 2 | Sobic.001G414650 | - | K08678: UXS1, UDP-glucuronate decarboxylase |
| 3 | Sobic.002G340600 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed | K17871: NADH:ubiquinone reductase (non-electrogenic) |
| 4 | Sobic.003G114600 | TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed | - |
| 5 | Sobic.002G283200 | expressed protein | - |
| 6 | Sobic.006G105100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed | K01785: galM, aldose 1-epimerase |
| 7 | Sobic.004G042501 | - | - |
| 8 | Sobic.002G380300 | ras-related protein, putative, expressed | K07893: Ras-related protein Rab-6A |
| 9 | Sobic.003G290500 | profilin domain containing protein, expressed | K05759: profilin |
| 10 | Sobic.002G170100 | NAD dependent epimerase/dehydratase family protein, putative, expressed | K01784: galE, UDP-glucose 4-epimerase |
| 11 | Sobic.001G039100 | oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed | - |
| 12 | Sobic.003G304600 | alpha-1,4-glucan-protein synthase, putative, expressed | K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase |
| 13 | Sobic.002G404600 | expressed protein | - |
| 14 | Sobic.003G019450 | - | - |
| 15 | Sobic.004G180100 | - | - |
| 16 | Sobic.009G242200 | CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed | K04371: ERK, mitogen-activated protein kinase 1/3 |
| 17 | Sobic.001G333700 | ZOS3-10 - C2H2 zinc finger protein, expressed | - |
| 18 | Sobic.003G110932 | - | - |
| 19 | Sobic.007G070900 | OsFBL43 - F-box domain and LRR containing protein, expressed | - |
| 20 | Sobic.001G357400 | emp24/gp25L/p24 family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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