Gene annotation
| Transcriptome id | Sobic.006G105100.1,Sobic.006G105100.2 |
|---|---|
| Synonym | Sb06g018820 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543) aldose 1-epimerase, putative, expressed |
| UniProt | A0A1Z5RD70 , C5Y9T2 |
| Pfam | PF01263 |
| Panther DB | PTHR10091 PTHR10091:SF13 |
| NCBI CDD | KOG1604; Predicted mutarotase |
| KEGG Orthology | K01785; galM, aldose 1-epimerase |
| Gene Ontology | GO:0016853; isomerase activity GO:0005975carbohydrate metabolic process |
Orthologs (automatic annotation)
| TAIR | AT3G47800 : Galactose mutarotase-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g38540.1 : aldose 1-epimerase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a011133 , Zm00025a011135 , Zm00025a056196 |
| Brachypodium | KQJ82952 , KQJ82956 |
| Barley | HORVU2Hr1G080140.1 , HORVU2Hr1G080140.3 , HORVU2Hr1G080140.2 , HORVU2Hr1G080140.5 , HORVU2Hr1G080140.4 , HORVU2Hr1G080140.7 , HORVU2Hr1G080140.6 , HORVU2Hr1G080060.3 , HORVU2Hr1G080060.1 , HORVU2Hr1G080060.4 , HORVU2Hr1G080190.2 , HORVU2Hr1G080190.1 |
| Wheat | TraesCS2A02G343900 , TraesCS2A02G344000 , TraesCS2B02G341300 , TraesCS2B02G341300 , TraesCS2D02G322200 , TraesCS2B02G341400 , TraesCS2B02G341400 , TraesCS2A02G343300 , TraesCS2A02G343800 , TraesCS2B02G341500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G380300 | ras-related protein, putative, expressed | K07893: Ras-related protein Rab-6A |
| 2 | Sobic.004G290500 | actin-depolymerizing factor, putative, expressed | K05765: cofilin |
| 3 | Sobic.001G261416 | - | K01858: INO1, myo-inositol-1-phosphate synthase |
| 4 | Sobic.001G329200 | rab GDP dissociation inhibitor alpha, putative, expressed | K17255: Rab GDP dissociation inhibitor |
| 5 | Sobic.010G090200 | OsMADS63 - MADS-box family gene with MIKC , type-box, expressed | - |
| 6 | Sobic.001G041600 | clathrin adaptor complex small chain domain containing protein, expressed | K12394: AP-1 complex subunit sigma 1/2 |
| 7 | Sobic.001G332000 | pollen allergen, putative, expressed | - |
| 8 | Sobic.001G171300 | UDP-glucose 6-dehydrogenase, putative, expressed | K00012: UGDH, UDPglucose 6-dehydrogenase |
| 9 | Sobic.001G287400 | VQ domain containing protein, putative, expressed | - |
| 10 | Sobic.010G207800 | E1-E2 ATPase domain containing protein, expressed | K01535: PMA1, H+-transporting ATPase |
| 11 | Sobic.001G130500 | - | - |
| 12 | Sobic.003G175950 | - | - |
| 13 | Sobic.007G215200 | "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed | K01537: P-type Ca2+ transporter type 2C |
| 14 | Sobic.008G176500 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AGC_AGC_other_GWLd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed | - |
| 15 | Sobic.007G014000 | OsFBX142 - F-box domain containing protein, expressed | - |
| 16 | Sobic.010G040400 | polygalacturonase, putative, expressed | - |
| 17 | Sobic.001G165700 | B3 DNA binding domain containing protein, expressed | - |
| 18 | Sobic.010G216100 | leaf senescence related protein, putative, expressed | - |
| 19 | Sobic.010G215000 | fasciclin-like arabinogalactan precursor protein, putative, expressed | - |
| 20 | Sobic.005G040700 | amino acid permease family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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