Gene annotation
Transcriptome id Sobic.004G290500.1
Synonym Sb04g032550, ADF11
Functional annotation actin-depolymerizing factor, putative, expressed
UniProt C5Y1E7
Pfam PF00241
Panther DB PTHR11913 PTHR11913:SF30
NCBI CDD KOG1735; Actin depolymerizing factor
KEGG Orthology K05765; cofilin
Gene Ontology GO:0005622; intracellular GO:0003779actin binding GO:0015629actin cytoskeleton


Orthologs (automatic annotation)
TAIR AT1G01750 : actin depolymerizing factor 11
RAP-DB (Rice) LOC_Os02g44470.1 : actin-depolymerizing factor, putative, expressed
MaizeGDB (Corn) Zm00025a001529 , Zm00025a010273 , Zm00025a040911 , Zm00025a021422 , Zm00025a052910 , Zm00025a032230 , Zm00025a048048 , Zm00025a014631
Brachypodium KQK00663 , KQK16232 , PNT77739 , PNT61627 , KQK22600
Barley HORVU4Hr1G063830.7 , HORVU2Hr1G097130.4 , HORVU2Hr1G097130.5 , HORVU2Hr1G097130.1 , HORVU2Hr1G097130.2 , HORVU2Hr1G097130.3 , HORVU2Hr1G053570.1 , HORVU4Hr1G063830.8 , HORVU4Hr1G063830.4 , HORVU4Hr1G063830.5 , HORVU4Hr1G063830.6 , HORVU4Hr1G063830.2 , HORVU4Hr1G063830.3 , HORVU2Hr1G053580.1 , HORVU2Hr1G053580.3 , HORVU2Hr1G053580.2
Wheat TraesCS2D02G408100 , TraesCS2D02G235200 , TraesCS4A02G071400 , TraesCS6A02G247000 , TraesCS2A02G410700 , TraesCS6D02G229200 , TraesCS2B02G255200 , TraesCS4D02G228100 , TraesCS2B02G429500 , TraesCS4B02G227300 , TraesCS6B02G277600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G207800 E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
2 Sobic.007G215200 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
3 Sobic.005G006100 hypothetical protein -
4 Sobic.001G167300 - -
5 Sobic.001G192300 expressed protein -
6 Sobic.010G090200 OsMADS63 - MADS-box family gene with MIKC , type-box, expressed -
7 Sobic.001G261416 - K01858: INO1, myo-inositol-1-phosphate synthase
8 Sobic.007G014000 OsFBX142 - F-box domain containing protein, expressed -
9 Sobic.010G216100 leaf senescence related protein, putative, expressed -
10 Sobic.010G240300 Os12bglu38 - beta-glucosidase/beta-mannosidase/exoglucanase homologue, expressed K05350: beta-glucosidase
11 Sobic.001G089400 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
12 Sobic.007G122600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
13 Sobic.002G380300 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
14 Sobic.003G004000 - -
15 Sobic.010G016200 expressed protein -
16 Sobic.008G043200 - -
17 Sobic.001G287400 VQ domain containing protein, putative, expressed -
18 Sobic.005G006400 DEFL55 - Defensin and Defensin-like DEFL family, expressed -
19 Sobic.001G329200 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
20 Sobic.001G332000 pollen allergen, putative, expressed -


Gene co-expression network
sample Sobic004G290500 Sobic004G290500 Sobic010G207800 Sobic010G207800 Sobic004G290500--Sobic010G207800 Sobic007G215200 Sobic007G215200 Sobic004G290500--Sobic007G215200 Sobic005G006100 Sobic005G006100 Sobic004G290500--Sobic005G006100 Sobic001G167300 Sobic001G167300 Sobic004G290500--Sobic001G167300 Sobic001G192300 Sobic001G192300 Sobic004G290500--Sobic001G192300 Sobic010G090200 Sobic010G090200 Sobic004G290500--Sobic010G090200 Sobic001G261416 Sobic001G261416 Sobic004G290500--Sobic001G261416 Sobic007G014000 Sobic007G014000 Sobic004G290500--Sobic007G014000 Sobic010G216100 Sobic010G216100 Sobic004G290500--Sobic010G216100 Sobic010G207800--Sobic007G014000 Sobic010G207800--Sobic007G215200 Sobic010G207800--Sobic001G261416 Sobic010G207800--Sobic010G090200 Sobic010G207800--Sobic010G216100 Sobic010G207800--Sobic005G006100 Sobic010G240300 Sobic010G240300 Sobic010G207800--Sobic010G240300 Sobic010G207800--Sobic001G167300 Sobic001G287400 Sobic001G287400 Sobic010G207800--Sobic001G287400 Sobic007G215200--Sobic010G207800 Sobic007G215200--Sobic001G261416 Sobic001G332000 Sobic001G332000 Sobic007G215200--Sobic001G332000 Sobic007G215200--Sobic010G090200 Sobic001G329200 Sobic001G329200 Sobic007G215200--Sobic001G329200 Sobic007G215200--Sobic001G287400 Sobic007G215200--Sobic007G014000 Sobic001G171300 Sobic001G171300 Sobic007G215200--Sobic001G171300 Sobic007G215200--Sobic010G216100 Sobic007G122600 Sobic007G122600 Sobic005G006100--Sobic007G122600 Sobic007G134501 Sobic007G134501 Sobic005G006100--Sobic007G134501 Sobic002G194201 Sobic002G194201 Sobic005G006100--Sobic002G194201 Sobic003G007650 Sobic003G007650 Sobic005G006100--Sobic003G007650 Sobic005G006100--Sobic010G240300 Sobic005G006400 Sobic005G006400 Sobic005G006100--Sobic005G006400 Sobic007G035200 Sobic007G035200 Sobic005G006100--Sobic007G035200 Sobic005G040100 Sobic005G040100 Sobic005G006100--Sobic005G040100 Sobic005G006100--Sobic010G207800 Sobic003G004000 Sobic003G004000 Sobic001G167300--Sobic003G004000 Sobic001G167300--Sobic005G006100 Sobic001G167300--Sobic010G207800 Sobic001G167300--Sobic007G122600 Sobic008G024200 Sobic008G024200 Sobic001G167300--Sobic008G024200 Sobic004G192600 Sobic004G192600 Sobic001G167300--Sobic004G192600 Sobic001G089400 Sobic001G089400 Sobic001G167300--Sobic001G089400 Sobic009G234900 Sobic009G234900 Sobic001G167300--Sobic009G234900 Sobic005G189100 Sobic005G189100 Sobic001G167300--Sobic005G189100 Sobic001G192300--Sobic007G122600 Sobic001G192300--Sobic005G006100 Sobic001G192300--Sobic002G194201 Sobic001G192300--Sobic007G134501 Sobic001G192300--Sobic005G040100 Sobic001G192300--Sobic003G007650 Sobic003G245300 Sobic003G245300 Sobic001G192300--Sobic003G245300 Sobic001G192300--Sobic005G006400 Sobic001G192300--Sobic007G035200 Sobic010G090200--Sobic001G261416 Sobic010G090200--Sobic007G014000 Sobic010G090200--Sobic010G240300 Sobic010G090200--Sobic010G216100 Sobic010G090200--Sobic001G171300 Sobic010G090200--Sobic010G207800 Sobic010G215000 Sobic010G215000 Sobic010G090200--Sobic010G215000 Sobic010G090200--Sobic001G287400 Sobic010G090200--Sobic005G006400 Sobic001G261416--Sobic010G090200 Sobic001G261416--Sobic001G171300 Sobic001G261416--Sobic001G287400 Sobic001G261416--Sobic001G329200 Sobic001G261416--Sobic007G014000 Sobic001G165700 Sobic001G165700 Sobic001G261416--Sobic001G165700 Sobic001G261416--Sobic010G216100 Sobic001G261416--Sobic010G207800 Sobic001G261416--Sobic010G215000 Sobic007G014000--Sobic010G090200 Sobic007G014000--Sobic010G240300 Sobic007G014000--Sobic010G216100 Sobic007G014000--Sobic001G261416 Sobic007G014000--Sobic010G207800 Sobic007G014000--Sobic005G006400 Sobic008G086500 Sobic008G086500 Sobic007G014000--Sobic008G086500 Sobic007G014000--Sobic007G035200 Sobic007G014000--Sobic005G006100 Sobic010G216100--Sobic007G014000 Sobic010G216100--Sobic010G240300 Sobic010G216100--Sobic010G090200 Sobic010G216100--Sobic001G261416 Sobic010G216100--Sobic008G086500 Sobic010G216100--Sobic005G006400 Sobic002G194300 Sobic002G194300 Sobic010G216100--Sobic002G194300 Sobic010G216100--Sobic010G215000 Sobic010G216100--Sobic010G207800
Octagon: transcription factors


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