Gene annotation
Transcriptome id Sobic.002G380300.1
Synonym ATRAB6A, RAB6, RAB6A, Sb02g039720, ATRABH1B
Functional annotation ras-related protein, putative, expressed
UniProt C5X2I3
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF475
NCBI CDD KOG0094; GTPase Rab6/YPT6/Ryh1, small G protein superfamily
KEGG Orthology K07893; Ras-related protein Rab-6A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT2G44610 : Ras-related small GTP-binding family protein
RAP-DB (Rice) LOC_Os07g31370.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a015240
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G105100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
2 Sobic.004G290500 actin-depolymerizing factor, putative, expressed K05765: cofilin
3 Sobic.008G176500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AGC_AGC_other_GWLd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
4 Sobic.001G041600 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
5 Sobic.010G016200 expressed protein -
6 Sobic.001G130500 - -
7 Sobic.001G332000 pollen allergen, putative, expressed -
8 Sobic.001G329200 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
9 Sobic.010G040400 polygalacturonase, putative, expressed -
10 Sobic.003G175950 - -
11 Sobic.003G304600 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
12 Sobic.001G287400 VQ domain containing protein, putative, expressed -
13 Sobic.005G040700 amino acid permease family protein, putative, expressed -
14 Sobic.001G261416 - K01858: INO1, myo-inositol-1-phosphate synthase
15 Sobic.001G171300 UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
16 Sobic.010G051000 "domain confirmed by Pfam database, expressed in flower, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
17 Sobic.007G215200 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
18 Sobic.001G306500 expansin precursor, putative, expressed -
19 Sobic.001G165700 B3 DNA binding domain containing protein, expressed -
20 Sobic.007G222100 - -


Gene co-expression network
sample Sobic002G380300 Sobic002G380300 Sobic006G105100 Sobic006G105100 Sobic002G380300--Sobic006G105100 Sobic004G290500 Sobic004G290500 Sobic002G380300--Sobic004G290500 Sobic008G176500 Sobic008G176500 Sobic002G380300--Sobic008G176500 Sobic001G041600 Sobic001G041600 Sobic002G380300--Sobic001G041600 Sobic010G016200 Sobic010G016200 Sobic002G380300--Sobic010G016200 Sobic001G130500 Sobic001G130500 Sobic002G380300--Sobic001G130500 Sobic001G332000 Sobic001G332000 Sobic002G380300--Sobic001G332000 Sobic001G329200 Sobic001G329200 Sobic002G380300--Sobic001G329200 Sobic010G040400 Sobic010G040400 Sobic002G380300--Sobic010G040400 Sobic006G105100--Sobic002G380300 Sobic006G105100--Sobic004G290500 Sobic001G261416 Sobic001G261416 Sobic006G105100--Sobic001G261416 Sobic006G105100--Sobic001G329200 Sobic010G090200 Sobic010G090200 Sobic006G105100--Sobic010G090200 Sobic006G105100--Sobic001G041600 Sobic006G105100--Sobic001G332000 Sobic001G171300 Sobic001G171300 Sobic006G105100--Sobic001G171300 Sobic001G287400 Sobic001G287400 Sobic006G105100--Sobic001G287400 Sobic010G207800 Sobic010G207800 Sobic004G290500--Sobic010G207800 Sobic007G215200 Sobic007G215200 Sobic004G290500--Sobic007G215200 Sobic005G006100 Sobic005G006100 Sobic004G290500--Sobic005G006100 Sobic001G167300 Sobic001G167300 Sobic004G290500--Sobic001G167300 Sobic001G192300 Sobic001G192300 Sobic004G290500--Sobic001G192300 Sobic004G290500--Sobic010G090200 Sobic004G290500--Sobic001G261416 Sobic007G014000 Sobic007G014000 Sobic004G290500--Sobic007G014000 Sobic010G216100 Sobic010G216100 Sobic004G290500--Sobic010G216100 Sobic008G176500--Sobic001G041600 Sobic003G304600 Sobic003G304600 Sobic008G176500--Sobic003G304600 Sobic009G203900 Sobic009G203900 Sobic008G176500--Sobic009G203900 Sobic007G222100 Sobic007G222100 Sobic008G176500--Sobic007G222100 Sobic002G053800 Sobic002G053800 Sobic008G176500--Sobic002G053800 Sobic004G293300 Sobic004G293300 Sobic008G176500--Sobic004G293300 Sobic008G176500--Sobic001G130500 Sobic010G051000 Sobic010G051000 Sobic008G176500--Sobic010G051000 Sobic001G024900 Sobic001G024900 Sobic008G176500--Sobic001G024900 Sobic002G082400 Sobic002G082400 Sobic001G041600--Sobic002G082400 Sobic005G220500 Sobic005G220500 Sobic001G041600--Sobic005G220500 Sobic003G445300 Sobic003G445300 Sobic001G041600--Sobic003G445300 Sobic003G175600 Sobic003G175600 Sobic001G041600--Sobic003G175600 Sobic005G220400 Sobic005G220400 Sobic001G041600--Sobic005G220400 Sobic001G269200 Sobic001G269200 Sobic001G041600--Sobic001G269200 Sobic001G041600--Sobic009G203900 Sobic001G041600--Sobic004G293300 Sobic001G041600--Sobic002G053800 Sobic008G043200 Sobic008G043200 Sobic010G016200--Sobic008G043200 Sobic010G016200--Sobic010G040400 Sobic001G092500 Sobic001G092500 Sobic010G016200--Sobic001G092500 Sobic009G175400 Sobic009G175400 Sobic010G016200--Sobic009G175400 Sobic010G016200--Sobic007G215200 Sobic010G016200--Sobic001G332000 Sobic010G016200--Sobic010G207800 Sobic005G145400 Sobic005G145400 Sobic010G016200--Sobic005G145400 Sobic001G089400 Sobic001G089400 Sobic010G016200--Sobic001G089400 Sobic003G175950 Sobic003G175950 Sobic001G130500--Sobic003G175950 Sobic001G130500--Sobic001G329200 Sobic001G130500--Sobic001G332000 Sobic005G040700 Sobic005G040700 Sobic001G130500--Sobic005G040700 Sobic001G130500--Sobic001G171300 Sobic001G130500--Sobic001G287400 Sobic001G130500--Sobic010G051000 Sobic001G269100 Sobic001G269100 Sobic001G130500--Sobic001G269100 Sobic001G165700 Sobic001G165700 Sobic001G130500--Sobic001G165700 Sobic001G332000--Sobic001G329200 Sobic001G332000--Sobic001G130500 Sobic001G332000--Sobic003G175950 Sobic001G332000--Sobic005G040700 Sobic001G332000--Sobic001G287400 Sobic001G332000--Sobic001G171300 Sobic001G332000--Sobic010G051000 Sobic001G332000--Sobic001G269100 Sobic001G332000--Sobic001G261416 Sobic001G329200--Sobic003G175950 Sobic001G329200--Sobic001G332000 Sobic001G329200--Sobic001G287400 Sobic001G329200--Sobic001G171300 Sobic001G329200--Sobic001G130500 Sobic001G329200--Sobic005G040700 Sobic001G329200--Sobic001G261416 Sobic001G329200--Sobic001G165700 Sobic001G329200--Sobic001G269100 Sobic010G040400--Sobic009G175400 Sobic010G276100 Sobic010G276100 Sobic010G040400--Sobic010G276100 Sobic010G144700 Sobic010G144700 Sobic010G040400--Sobic010G144700 Sobic010G040400--Sobic001G332000 Sobic010G040400--Sobic005G040700 Sobic010G040400--Sobic001G092500 Sobic009G082900 Sobic009G082900 Sobic010G040400--Sobic009G082900 Sobic010G040400--Sobic010G051000 Sobic001G288400 Sobic001G288400 Sobic010G040400--Sobic001G288400
Octagon: transcription factors


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