Gene annotation
Transcriptome id Sobic.008G176500.2,Sobic.008G176500.1
Synonym IRE, Sb08g022050
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
AGC_AGC_other_GWLd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed
UniProt C5YSF5
Pfam PF07714
Panther DB PTHR24356 PTHR24356:SF144
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G62310 : AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
RAP-DB (Rice) LOC_Os12g42660.1 : AGC_AGC_other_GWLd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed
MaizeGDB (Corn) Zm00025a025126
Brachypodium KQJ85728 , PNT62299 , KQJ85725 , KQJ85726 , KQJ85727 , PNT62300
Barley -
Wheat TraesCS5A02G025700 , TraesCS5D02G033500 , TraesCS5B02G025000 , TraesCS5B02G025000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G041600 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
2 Sobic.003G304600 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
3 Sobic.009G203900 profilin domain containing protein, expressed K05759: profilin
4 Sobic.007G222100 - -
5 Sobic.002G053800 glycosyl hydrolase family 10 protein, putative, expressed -
6 Sobic.004G293300 zinc-binding protein, putative, expressed -
7 Sobic.001G130500 - -
8 Sobic.010G051000 "domain confirmed by Pfam database, expressed in flower, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
9 Sobic.001G024900 expressed protein -
10 Sobic.003G175600 plant protein of unknown function domain containing protein, expressed -
11 Sobic.001G306500 expansin precursor, putative, expressed -
12 Sobic.001G269800 - -
13 Sobic.002G082400 DUF567 domain containing protein, putative, expressed -
14 Sobic.003G175950 - -
15 Sobic.010G091800 expressed protein -
16 Sobic.008G017500 - -
17 Sobic.005G040700 amino acid permease family protein, putative, expressed -
18 Sobic.001G306400 expansin precursor, putative, expressed -
19 Sobic.001G093100 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -
20 Sobic.001G288400 invertase/pectin methylesterase inhibitor family protein, putative, expressed -


Gene co-expression network
sample Sobic008G176500 Sobic008G176500 Sobic001G041600 Sobic001G041600 Sobic008G176500--Sobic001G041600 Sobic003G304600 Sobic003G304600 Sobic008G176500--Sobic003G304600 Sobic009G203900 Sobic009G203900 Sobic008G176500--Sobic009G203900 Sobic007G222100 Sobic007G222100 Sobic008G176500--Sobic007G222100 Sobic002G053800 Sobic002G053800 Sobic008G176500--Sobic002G053800 Sobic004G293300 Sobic004G293300 Sobic008G176500--Sobic004G293300 Sobic001G130500 Sobic001G130500 Sobic008G176500--Sobic001G130500 Sobic010G051000 Sobic010G051000 Sobic008G176500--Sobic010G051000 Sobic001G024900 Sobic001G024900 Sobic008G176500--Sobic001G024900 Sobic002G082400 Sobic002G082400 Sobic001G041600--Sobic002G082400 Sobic005G220500 Sobic005G220500 Sobic001G041600--Sobic005G220500 Sobic003G445300 Sobic003G445300 Sobic001G041600--Sobic003G445300 Sobic003G175600 Sobic003G175600 Sobic001G041600--Sobic003G175600 Sobic005G220400 Sobic005G220400 Sobic001G041600--Sobic005G220400 Sobic001G269200 Sobic001G269200 Sobic001G041600--Sobic001G269200 Sobic001G041600--Sobic009G203900 Sobic001G041600--Sobic004G293300 Sobic001G041600--Sobic002G053800 Sobic001G306400 Sobic001G306400 Sobic003G304600--Sobic001G306400 Sobic003G304600--Sobic008G176500 Sobic008G154300 Sobic008G154300 Sobic003G304600--Sobic008G154300 Sobic005G142400 Sobic005G142400 Sobic003G304600--Sobic005G142400 Sobic010G091800 Sobic010G091800 Sobic003G304600--Sobic010G091800 Sobic008G017500 Sobic008G017500 Sobic003G304600--Sobic008G017500 Sobic003G246500 Sobic003G246500 Sobic003G304600--Sobic003G246500 Sobic003G304600--Sobic002G053800 Sobic001G269800 Sobic001G269800 Sobic003G304600--Sobic001G269800 Sobic009G203900--Sobic007G222100 Sobic009G203900--Sobic002G053800 Sobic009G203900--Sobic001G024900 Sobic009G203900--Sobic010G051000 Sobic009G203900--Sobic003G175600 Sobic009G203900--Sobic004G293300 Sobic001G306500 Sobic001G306500 Sobic009G203900--Sobic001G306500 Sobic009G203900--Sobic001G269800 Sobic009G203900--Sobic010G091800 Sobic007G222100--Sobic001G024900 Sobic007G222100--Sobic010G051000 Sobic007G222100--Sobic001G306500 Sobic007G222100--Sobic009G203900 Sobic001G288400 Sobic001G288400 Sobic007G222100--Sobic001G288400 Sobic004G100900 Sobic004G100900 Sobic007G222100--Sobic004G100900 Sobic007G222100--Sobic001G269800 Sobic005G040700 Sobic005G040700 Sobic007G222100--Sobic005G040700 Sobic007G222100--Sobic001G306400 Sobic002G053800--Sobic010G091800 Sobic002G053800--Sobic004G293300 Sobic002G053800--Sobic008G017500 Sobic002G053800--Sobic009G203900 Sobic002G053800--Sobic008G154300 Sobic002G053800--Sobic001G269800 Sobic002G053800--Sobic003G175600 Sobic006G282100 Sobic006G282100 Sobic002G053800--Sobic006G282100 Sobic002G053800--Sobic001G306400 Sobic004G293300--Sobic002G053800 Sobic004G293300--Sobic010G091800 Sobic004G293300--Sobic009G203900 Sobic004G293300--Sobic001G269800 Sobic004G293300--Sobic003G175600 Sobic004G293300--Sobic008G017500 Sobic004G293300--Sobic006G282100 Sobic004G293300--Sobic008G154300 Sobic003G394801 Sobic003G394801 Sobic004G293300--Sobic003G394801 Sobic003G175950 Sobic003G175950 Sobic001G130500--Sobic003G175950 Sobic001G329200 Sobic001G329200 Sobic001G130500--Sobic001G329200 Sobic001G332000 Sobic001G332000 Sobic001G130500--Sobic001G332000 Sobic001G130500--Sobic005G040700 Sobic001G171300 Sobic001G171300 Sobic001G130500--Sobic001G171300 Sobic001G287400 Sobic001G287400 Sobic001G130500--Sobic001G287400 Sobic001G130500--Sobic010G051000 Sobic001G269100 Sobic001G269100 Sobic001G130500--Sobic001G269100 Sobic001G165700 Sobic001G165700 Sobic001G130500--Sobic001G165700 Sobic010G051000--Sobic007G222100 Sobic010G051000--Sobic001G306500 Sobic010G051000--Sobic001G024900 Sobic010G051000--Sobic001G288400 Sobic010G051000--Sobic005G040700 Sobic010G051000--Sobic009G203900 Sobic010G051000--Sobic003G175950 Sobic010G051000--Sobic001G130500 Sobic010G051000--Sobic004G100900 Sobic001G024900--Sobic001G306500 Sobic001G024900--Sobic007G222100 Sobic001G024900--Sobic001G288400 Sobic001G024900--Sobic010G051000 Sobic001G024900--Sobic009G203900 Sobic001G024900--Sobic004G100900 Sobic001G024900--Sobic001G306400 Sobic001G093100 Sobic001G093100 Sobic001G024900--Sobic001G093100 Sobic001G024900--Sobic001G269800
Octagon: transcription factors


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