Gene annotation
Transcriptome id Sobic.001G041600.1
Synonym AP19, Sb01g003840
Functional annotation clathrin adaptor complex small chain domain containing protein, expressed
UniProt C5WW02
Pfam PF01217
Panther DB PTHR11753 PTHR11753:SF13
NCBI CDD KOG0934; Clathrin adaptor complex, small subunit
KEGG Orthology K12394; AP-1 complex subunit sigma 1/2
Gene Ontology GO:0015031; protein transport GO:0008565obsolete protein transporter activity


Orthologs (automatic annotation)
TAIR AT2G17380 : associated protein 19
RAP-DB (Rice) LOC_Os03g59660.1 : clathrin adaptor complex small chain domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008737
Brachypodium -
Barley -
Wheat -
Populus PNT03607 , PNT09574 , PNT09552


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G082400 DUF567 domain containing protein, putative, expressed -
2 Sobic.005G220500 pollen allergen, putative, expressed -
3 Sobic.003G445300 aquaporin protein, putative, expressed K09873: aquaporin TIP
4 Sobic.003G175600 plant protein of unknown function domain containing protein, expressed -
5 Sobic.005G220400 pollen allergen, putative, expressed -
6 Sobic.001G269200 "GDSL-like lipase/acylhydrolase, is the most likely gene associated with epicuticular wax deposition."(PubMedID : 28702690)@GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.009G203900 profilin domain containing protein, expressed K05759: profilin
8 Sobic.004G293300 zinc-binding protein, putative, expressed -
9 Sobic.002G053800 glycosyl hydrolase family 10 protein, putative, expressed -
10 Sobic.001G165700 B3 DNA binding domain containing protein, expressed -
11 Sobic.002G414000 - -
12 Sobic.007G167000 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
13 Sobic.006G043101 - -
14 Sobic.005G214800 - -
15 Sobic.001G246001 - K10523: speckle-type POZ protein
16 Sobic.010G091800 expressed protein -
17 Sobic.008G125801 - -
18 Sobic.003G175950 - -
19 Sobic.010G107800 - -
20 Sobic.001G171300 UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase


Gene co-expression network
sample Sobic001G041600 Sobic001G041600 Sobic002G082400 Sobic002G082400 Sobic001G041600--Sobic002G082400 Sobic005G220500 Sobic005G220500 Sobic001G041600--Sobic005G220500 Sobic003G445300 Sobic003G445300 Sobic001G041600--Sobic003G445300 Sobic003G175600 Sobic003G175600 Sobic001G041600--Sobic003G175600 Sobic005G220400 Sobic005G220400 Sobic001G041600--Sobic005G220400 Sobic001G269200 Sobic001G269200 Sobic001G041600--Sobic001G269200 Sobic009G203900 Sobic009G203900 Sobic001G041600--Sobic009G203900 Sobic004G293300 Sobic004G293300 Sobic001G041600--Sobic004G293300 Sobic002G053800 Sobic002G053800 Sobic001G041600--Sobic002G053800 Sobic002G082400--Sobic005G220500 Sobic002G082400--Sobic003G445300 Sobic002G082400--Sobic005G220400 Sobic002G082400--Sobic001G269200 Sobic002G082400--Sobic003G175600 Sobic002G414000 Sobic002G414000 Sobic002G082400--Sobic002G414000 Sobic006G043101 Sobic006G043101 Sobic002G082400--Sobic006G043101 Sobic007G167000 Sobic007G167000 Sobic002G082400--Sobic007G167000 Sobic001G165700 Sobic001G165700 Sobic002G082400--Sobic001G165700 Sobic005G220500--Sobic002G082400 Sobic005G220500--Sobic001G269200 Sobic005G220500--Sobic003G445300 Sobic005G220500--Sobic005G220400 Sobic005G220500--Sobic002G414000 Sobic005G220500--Sobic003G175600 Sobic005G220500--Sobic007G167000 Sobic005G220500--Sobic006G043101 Sobic010G107800 Sobic010G107800 Sobic005G220500--Sobic010G107800 Sobic003G445300--Sobic005G220400 Sobic003G445300--Sobic002G082400 Sobic003G445300--Sobic005G220500 Sobic003G445300--Sobic002G414000 Sobic003G445300--Sobic001G269200 Sobic003G445300--Sobic006G043101 Sobic005G214800 Sobic005G214800 Sobic003G445300--Sobic005G214800 Sobic001G246001 Sobic001G246001 Sobic003G445300--Sobic001G246001 Sobic003G445300--Sobic001G165700 Sobic003G175600--Sobic005G220500 Sobic003G175600--Sobic002G082400 Sobic003G175600--Sobic009G203900 Sobic003G175600--Sobic002G053800 Sobic003G175600--Sobic004G293300 Sobic010G091800 Sobic010G091800 Sobic003G175600--Sobic010G091800 Sobic003G175600--Sobic007G167000 Sobic003G175600--Sobic001G269200 Sobic003G175600--Sobic003G445300 Sobic005G220400--Sobic003G445300 Sobic005G220400--Sobic002G082400 Sobic005G220400--Sobic002G414000 Sobic005G220400--Sobic005G220500 Sobic005G220400--Sobic006G043101 Sobic005G220400--Sobic001G269200 Sobic005G220400--Sobic005G214800 Sobic005G220400--Sobic001G246001 Sobic010G215000 Sobic010G215000 Sobic005G220400--Sobic010G215000 Sobic001G269200--Sobic005G220500 Sobic001G269200--Sobic010G107800 Sobic007G129800 Sobic007G129800 Sobic001G269200--Sobic007G129800 Sobic001G269200--Sobic002G414000 Sobic001G269200--Sobic002G082400 Sobic001G269200--Sobic007G167000 Sobic001G269200--Sobic003G445300 Sobic001G269200--Sobic006G043101 Sobic001G269200--Sobic005G220400 Sobic007G222100 Sobic007G222100 Sobic009G203900--Sobic007G222100 Sobic009G203900--Sobic002G053800 Sobic001G024900 Sobic001G024900 Sobic009G203900--Sobic001G024900 Sobic010G051000 Sobic010G051000 Sobic009G203900--Sobic010G051000 Sobic009G203900--Sobic003G175600 Sobic009G203900--Sobic004G293300 Sobic001G306500 Sobic001G306500 Sobic009G203900--Sobic001G306500 Sobic001G269800 Sobic001G269800 Sobic009G203900--Sobic001G269800 Sobic009G203900--Sobic010G091800 Sobic004G293300--Sobic002G053800 Sobic004G293300--Sobic010G091800 Sobic004G293300--Sobic009G203900 Sobic004G293300--Sobic001G269800 Sobic004G293300--Sobic003G175600 Sobic008G017500 Sobic008G017500 Sobic004G293300--Sobic008G017500 Sobic006G282100 Sobic006G282100 Sobic004G293300--Sobic006G282100 Sobic008G154300 Sobic008G154300 Sobic004G293300--Sobic008G154300 Sobic003G394801 Sobic003G394801 Sobic004G293300--Sobic003G394801 Sobic002G053800--Sobic010G091800 Sobic002G053800--Sobic004G293300 Sobic002G053800--Sobic008G017500 Sobic002G053800--Sobic009G203900 Sobic002G053800--Sobic008G154300 Sobic002G053800--Sobic001G269800 Sobic002G053800--Sobic003G175600 Sobic002G053800--Sobic006G282100 Sobic001G306400 Sobic001G306400 Sobic002G053800--Sobic001G306400
Octagon: transcription factors


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