Gene annotation
Transcriptome id Sobic.001G089400.1
Synonym 1, Sb01g008060, AMT2, ATAMT2
Functional annotation ammonium transporter protein, putative, expressed
UniProt R4JAH4 , A0A1B6QI33
Pfam PF00909
Panther DB PTHR11730 PTHR11730:SF31
NCBI CDD KOG0682; Ammonia permease
KEGG Orthology K03320; amt, AMT, ammonium transporter, Amt family
Gene Ontology GO:0016020; membrane GO:0015696ammonium transport GO:0008519ammonium transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT2G38290 : ammonium transporter 2
RAP-DB (Rice) LOC_Os01g65000.1 : ammonium transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a016807 , Zm00025a043934 , Zm00025a039553 , Zm00025a008959
Brachypodium KQK05814 , KQK13209 , KQK10804 , KQK10805 , KQK12242
Barley HORVU3Hr1G082540.2 , HORVU3Hr1G082540.1 , HORVU3Hr1G087690.2 , HORVU5Hr1G095030.1 , HORVU5Hr1G095030.2 , HORVU3Hr1G087690.1 , HORVU5Hr1G118590.9 , HORVU5Hr1G118590.8 , HORVU5Hr1G118590.7 , HORVU5Hr1G118590.6 , HORVU5Hr1G118590.2 , HORVU5Hr1G118590.1 , HORVU0Hr1G014360.2 , HORVU0Hr1G014360.3 , HORVU0Hr1G014360.1 , HORVU3Hr1G082610.2 , HORVU3Hr1G082610.1 , HORVU1Hr1G070730.8 , HORVU1Hr1G070730.6 , HORVU1Hr1G070730.7 , HORVU1Hr1G070730.4 , HORVU1Hr1G070730.5 , HORVU1Hr1G070730.2 , HORVU1Hr1G070730.3 , HORVU1Hr1G070730.1
Wheat TraesCS3A02G350800 , TraesCS3D02G344800 , TraesCS5D02G519400 , TraesCS5D02G519400 , TraesCS5B02G520200 , TraesCS1D02G296600 , TraesCS3B02G383400 , TraesCS4A02G352900 , TraesCS1A02G295300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G192600 LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.003G004000 - -
3 Sobic.008G043200 - -
4 Sobic.001G167300 - -
5 Sobic.005G037700 OsFBX378 - F-box domain containing protein, expressed -
6 Sobic.010G207800 E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
7 Sobic.010G016200 expressed protein -
8 Sobic.003G420500 Ca ATPase 3(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
9 Sobic.007G215200 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
10 Sobic.005G145400 RNA recognition motif containing protein, putative, expressed -
11 Sobic.004G290500 actin-depolymerizing factor, putative, expressed K05765: cofilin
12 Sobic.005G006100 hypothetical protein -
13 Sobic.008G024200 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
14 Sobic.010G121700 plastocyanin-like domain containing protein, putative, expressed -
15 Sobic.009G234900 WRKY43, expressed -
16 Sobic.001G092500 protein kinase domain containing protein, expressed -
17 Sobic.007G122600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
18 Sobic.010G040400 polygalacturonase, putative, expressed -
19 Sobic.009G175400 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
20 Sobic.001G332000 pollen allergen, putative, expressed -


Gene co-expression network
sample Sobic001G089400 Sobic001G089400 Sobic004G192600 Sobic004G192600 Sobic001G089400--Sobic004G192600 Sobic003G004000 Sobic003G004000 Sobic001G089400--Sobic003G004000 Sobic008G043200 Sobic008G043200 Sobic001G089400--Sobic008G043200 Sobic001G167300 Sobic001G167300 Sobic001G089400--Sobic001G167300 Sobic005G037700 Sobic005G037700 Sobic001G089400--Sobic005G037700 Sobic010G207800 Sobic010G207800 Sobic001G089400--Sobic010G207800 Sobic010G016200 Sobic010G016200 Sobic001G089400--Sobic010G016200 Sobic003G420500 Sobic003G420500 Sobic001G089400--Sobic003G420500 Sobic007G215200 Sobic007G215200 Sobic001G089400--Sobic007G215200 Sobic004G192600--Sobic001G089400 Sobic004G192600--Sobic003G004000 Sobic004G192600--Sobic001G167300 Sobic004G192600--Sobic008G043200 Sobic004G192600--Sobic005G037700 Sobic004G192600--Sobic010G207800 Sobic004G192600--Sobic003G420500 Sobic004G192600--Sobic010G016200 Sobic004G192600--Sobic007G215200 Sobic003G004000--Sobic001G167300 Sobic003G004000--Sobic004G192600 Sobic003G004000--Sobic001G089400 Sobic003G004000--Sobic008G043200 Sobic008G024200 Sobic008G024200 Sobic003G004000--Sobic008G024200 Sobic003G004000--Sobic010G207800 Sobic010G121700 Sobic010G121700 Sobic003G004000--Sobic010G121700 Sobic005G006100 Sobic005G006100 Sobic003G004000--Sobic005G006100 Sobic009G234900 Sobic009G234900 Sobic003G004000--Sobic009G234900 Sobic008G043200--Sobic010G016200 Sobic005G145400 Sobic005G145400 Sobic008G043200--Sobic005G145400 Sobic009G175400 Sobic009G175400 Sobic008G043200--Sobic009G175400 Sobic008G043200--Sobic001G089400 Sobic010G040400 Sobic010G040400 Sobic008G043200--Sobic010G040400 Sobic008G043200--Sobic007G215200 Sobic001G092500 Sobic001G092500 Sobic008G043200--Sobic001G092500 Sobic008G043200--Sobic010G207800 Sobic001G332000 Sobic001G332000 Sobic008G043200--Sobic001G332000 Sobic001G167300--Sobic003G004000 Sobic001G167300--Sobic005G006100 Sobic001G167300--Sobic010G207800 Sobic007G122600 Sobic007G122600 Sobic001G167300--Sobic007G122600 Sobic001G167300--Sobic008G024200 Sobic001G167300--Sobic004G192600 Sobic001G167300--Sobic001G089400 Sobic001G167300--Sobic009G234900 Sobic005G189100 Sobic005G189100 Sobic001G167300--Sobic005G189100 Sobic005G037700--Sobic003G420500 Sobic005G037700--Sobic001G089400 Sobic005G037700--Sobic004G192600 Sobic005G037700--Sobic005G145400 Sobic007G204200 Sobic007G204200 Sobic005G037700--Sobic007G204200 Sobic007G197000 Sobic007G197000 Sobic005G037700--Sobic007G197000 Sobic005G037700--Sobic003G004000 Sobic005G037700--Sobic008G043200 Sobic001G525600 Sobic001G525600 Sobic005G037700--Sobic001G525600 Sobic007G014000 Sobic007G014000 Sobic010G207800--Sobic007G014000 Sobic010G207800--Sobic007G215200 Sobic001G261416 Sobic001G261416 Sobic010G207800--Sobic001G261416 Sobic010G090200 Sobic010G090200 Sobic010G207800--Sobic010G090200 Sobic010G216100 Sobic010G216100 Sobic010G207800--Sobic010G216100 Sobic010G207800--Sobic005G006100 Sobic010G240300 Sobic010G240300 Sobic010G207800--Sobic010G240300 Sobic010G207800--Sobic001G167300 Sobic001G287400 Sobic001G287400 Sobic010G207800--Sobic001G287400 Sobic010G016200--Sobic008G043200 Sobic010G016200--Sobic010G040400 Sobic010G016200--Sobic001G092500 Sobic010G016200--Sobic009G175400 Sobic010G016200--Sobic007G215200 Sobic010G016200--Sobic001G332000 Sobic010G016200--Sobic010G207800 Sobic010G016200--Sobic005G145400 Sobic010G016200--Sobic001G089400 Sobic003G420500--Sobic005G145400 Sobic003G420500--Sobic005G037700 Sobic003G420500--Sobic008G043200 Sobic003G420500--Sobic001G525600 Sobic003G420500--Sobic001G089400 Sobic003G420500--Sobic004G192600 Sobic004G099200 Sobic004G099200 Sobic003G420500--Sobic004G099200 Sobic003G420500--Sobic010G016200 Sobic003G420500--Sobic007G197000 Sobic007G215200--Sobic010G207800 Sobic007G215200--Sobic001G261416 Sobic007G215200--Sobic001G332000 Sobic007G215200--Sobic010G090200 Sobic001G329200 Sobic001G329200 Sobic007G215200--Sobic001G329200 Sobic007G215200--Sobic001G287400 Sobic007G215200--Sobic007G014000 Sobic001G171300 Sobic001G171300 Sobic007G215200--Sobic001G171300 Sobic007G215200--Sobic010G216100
Octagon: transcription factors


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