Gene annotation
Transcriptome id Sobic.003G420500.1
Synonym ACA11, Sb03g045370
Functional annotation Ca ATPase 3 (PubMedID : 22196357)
calcium-transporting ATPase, plasma membrane-type, putative, expressed
UniProt A0A1W0W1B6
Pfam PF00690 PF12515 PF00702 PF00689 PF00122
Panther DB PTHR24093 PTHR24093:SF296
NCBI CDD -
KEGG Orthology K01537; P-type Ca2+ transporter type 2C
Gene Ontology GO:0005516; calmodulin binding GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT3G57330 : autoinhibited Ca2+-ATPase 11
RAP-DB (Rice) LOC_Os01g71240.1 : calcium-transporting ATPase, plasma membrane-type, putative, expressed
MaizeGDB (Corn) Zm00025a026087 , Zm00025a005017 , Zm00025a053689 , Zm00025a033430 , Zm00025a039163 , Zm00025a017775 , Zm00025a033769
Brachypodium KQJ92384 , KQK11453
Barley HORVU3Hr1G102890.3 , HORVU3Hr1G102890.2 , HORVU3Hr1G102890.1 , HORVU3Hr1G102890.5 , HORVU3Hr1G102890.4
Wheat TraesCS3B02G519000 , TraesCS3D02G470100 , TraesCS4B02G080300 , TraesCS4B02G080300 , TraesCS5B02G135200 , TraesCS5B02G135200 , TraesCS5B02G135200 , TraesCS4A02G234700 , TraesCS4A02G234700 , TraesCS5A02G136200 , TraesCS3A02G475500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G145400 RNA recognition motif containing protein, putative, expressed -
2 Sobic.005G037700 OsFBX378 - F-box domain containing protein, expressed -
3 Sobic.008G043200 - -
4 Sobic.001G525600 fringe-related protein, putative, expressed -
5 Sobic.001G089400 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
6 Sobic.004G192600 LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
7 Sobic.004G099200 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
8 Sobic.010G016200 expressed protein -
9 Sobic.007G197000 "Candidate orthologue to the wheat Pm40 gene, probable glucan endo-1,3-betaglucosidase A6"(PubMedID : 27755575)@glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
10 Sobic.010G276100 transporter family protein, putative, expressed -
11 Sobic.001G135950 - -
12 Sobic.001G092500 protein kinase domain containing protein, expressed -
13 Sobic.003G004000 - -
14 Sobic.009G175400 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
15 Sobic.010G040400 polygalacturonase, putative, expressed -
16 Sobic.010G001200 CCT/B-box zinc finger protein, putative, expressed -
17 Sobic.002G125100 - -
18 Sobic.002G254700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
19 Sobic.007G215200 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
20 Sobic.004G071900 expressed protein -


Gene co-expression network
sample Sobic003G420500 Sobic003G420500 Sobic005G145400 Sobic005G145400 Sobic003G420500--Sobic005G145400 Sobic005G037700 Sobic005G037700 Sobic003G420500--Sobic005G037700 Sobic008G043200 Sobic008G043200 Sobic003G420500--Sobic008G043200 Sobic001G525600 Sobic001G525600 Sobic003G420500--Sobic001G525600 Sobic001G089400 Sobic001G089400 Sobic003G420500--Sobic001G089400 Sobic004G192600 Sobic004G192600 Sobic003G420500--Sobic004G192600 Sobic004G099200 Sobic004G099200 Sobic003G420500--Sobic004G099200 Sobic010G016200 Sobic010G016200 Sobic003G420500--Sobic010G016200 Sobic007G197000 Sobic007G197000 Sobic003G420500--Sobic007G197000 Sobic005G145400--Sobic003G420500 Sobic005G145400--Sobic008G043200 Sobic009G175400 Sobic009G175400 Sobic005G145400--Sobic009G175400 Sobic010G276100 Sobic010G276100 Sobic005G145400--Sobic010G276100 Sobic005G145400--Sobic004G099200 Sobic001G135950 Sobic001G135950 Sobic005G145400--Sobic001G135950 Sobic005G145400--Sobic005G037700 Sobic010G040400 Sobic010G040400 Sobic005G145400--Sobic010G040400 Sobic005G145400--Sobic001G525600 Sobic005G037700--Sobic003G420500 Sobic005G037700--Sobic001G089400 Sobic005G037700--Sobic004G192600 Sobic005G037700--Sobic005G145400 Sobic007G204200 Sobic007G204200 Sobic005G037700--Sobic007G204200 Sobic005G037700--Sobic007G197000 Sobic003G004000 Sobic003G004000 Sobic005G037700--Sobic003G004000 Sobic005G037700--Sobic008G043200 Sobic005G037700--Sobic001G525600 Sobic008G043200--Sobic010G016200 Sobic008G043200--Sobic005G145400 Sobic008G043200--Sobic009G175400 Sobic008G043200--Sobic001G089400 Sobic008G043200--Sobic010G040400 Sobic007G215200 Sobic007G215200 Sobic008G043200--Sobic007G215200 Sobic001G092500 Sobic001G092500 Sobic008G043200--Sobic001G092500 Sobic010G207800 Sobic010G207800 Sobic008G043200--Sobic010G207800 Sobic001G332000 Sobic001G332000 Sobic008G043200--Sobic001G332000 Sobic001G525600--Sobic004G099200 Sobic001G525600--Sobic001G135950 Sobic001G525600--Sobic005G145400 Sobic003G313200 Sobic003G313200 Sobic001G525600--Sobic003G313200 Sobic001G525600--Sobic003G420500 Sobic004G071900 Sobic004G071900 Sobic001G525600--Sobic004G071900 Sobic002G279900 Sobic002G279900 Sobic001G525600--Sobic002G279900 Sobic002G125100 Sobic002G125100 Sobic001G525600--Sobic002G125100 Sobic006G215500 Sobic006G215500 Sobic001G525600--Sobic006G215500 Sobic001G089400--Sobic004G192600 Sobic001G089400--Sobic003G004000 Sobic001G089400--Sobic008G043200 Sobic001G167300 Sobic001G167300 Sobic001G089400--Sobic001G167300 Sobic001G089400--Sobic005G037700 Sobic001G089400--Sobic010G207800 Sobic001G089400--Sobic010G016200 Sobic001G089400--Sobic003G420500 Sobic001G089400--Sobic007G215200 Sobic004G192600--Sobic001G089400 Sobic004G192600--Sobic003G004000 Sobic004G192600--Sobic001G167300 Sobic004G192600--Sobic008G043200 Sobic004G192600--Sobic005G037700 Sobic004G192600--Sobic010G207800 Sobic004G192600--Sobic003G420500 Sobic004G192600--Sobic010G016200 Sobic004G192600--Sobic007G215200 Sobic004G099200--Sobic001G135950 Sobic004G099200--Sobic001G525600 Sobic004G099200--Sobic004G071900 Sobic004G099200--Sobic005G145400 Sobic004G099200--Sobic002G125100 Sobic004G099200--Sobic006G215500 Sobic004G099200--Sobic003G313200 Sobic004G099200--Sobic010G276100 Sobic004G099200--Sobic002G279900 Sobic010G016200--Sobic008G043200 Sobic010G016200--Sobic010G040400 Sobic010G016200--Sobic001G092500 Sobic010G016200--Sobic009G175400 Sobic010G016200--Sobic007G215200 Sobic010G016200--Sobic001G332000 Sobic010G016200--Sobic010G207800 Sobic010G016200--Sobic005G145400 Sobic010G016200--Sobic001G089400 Sobic007G197000--Sobic005G037700 Sobic007G197000--Sobic003G420500 Sobic007G197000--Sobic004G192600 Sobic007G197000--Sobic001G089400 Sobic007G197000--Sobic003G004000 Sobic007G197000--Sobic008G043200 Sobic007G197000--Sobic007G204200 Sobic007G197000--Sobic005G145400 Sobic007G197000--Sobic001G525600
Octagon: transcription factors


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