Gene annotation
Transcriptome id Sobic.005G145400.2,Sobic.005G145400.3,Sobic.005G145400.1
Synonym Sb05g021040
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6PSH7 , A0A1B6PSI2 , C5Y3X9
Pfam PF00076
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G17720 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os11g34680.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a034074
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G420500 Ca ATPase 3(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
2 Sobic.008G043200 - -
3 Sobic.009G175400 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
4 Sobic.010G276100 transporter family protein, putative, expressed -
5 Sobic.004G099200 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
6 Sobic.001G135950 - -
7 Sobic.005G037700 OsFBX378 - F-box domain containing protein, expressed -
8 Sobic.010G040400 polygalacturonase, putative, expressed -
9 Sobic.001G525600 fringe-related protein, putative, expressed -
10 Sobic.010G016200 expressed protein -
11 Sobic.001G092500 protein kinase domain containing protein, expressed -
12 Sobic.002G254700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
13 Sobic.010G144700 plant protein of unknown function domain containing protein, expressed -
14 Sobic.001G089400 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
15 Sobic.002G125100 - -
16 Sobic.004G071900 expressed protein -
17 Sobic.006G259100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
18 Sobic.004G192600 LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.010G001200 CCT/B-box zinc finger protein, putative, expressed -
20 Sobic.009G082900 POEI21 - Pollen Ole e I allergen and extensin family protein precursor, expressed -


Gene co-expression network
sample Sobic005G145400 Sobic005G145400 Sobic003G420500 Sobic003G420500 Sobic005G145400--Sobic003G420500 Sobic008G043200 Sobic008G043200 Sobic005G145400--Sobic008G043200 Sobic009G175400 Sobic009G175400 Sobic005G145400--Sobic009G175400 Sobic010G276100 Sobic010G276100 Sobic005G145400--Sobic010G276100 Sobic004G099200 Sobic004G099200 Sobic005G145400--Sobic004G099200 Sobic001G135950 Sobic001G135950 Sobic005G145400--Sobic001G135950 Sobic005G037700 Sobic005G037700 Sobic005G145400--Sobic005G037700 Sobic010G040400 Sobic010G040400 Sobic005G145400--Sobic010G040400 Sobic001G525600 Sobic001G525600 Sobic005G145400--Sobic001G525600 Sobic003G420500--Sobic005G145400 Sobic003G420500--Sobic005G037700 Sobic003G420500--Sobic008G043200 Sobic003G420500--Sobic001G525600 Sobic001G089400 Sobic001G089400 Sobic003G420500--Sobic001G089400 Sobic004G192600 Sobic004G192600 Sobic003G420500--Sobic004G192600 Sobic003G420500--Sobic004G099200 Sobic010G016200 Sobic010G016200 Sobic003G420500--Sobic010G016200 Sobic007G197000 Sobic007G197000 Sobic003G420500--Sobic007G197000 Sobic008G043200--Sobic010G016200 Sobic008G043200--Sobic005G145400 Sobic008G043200--Sobic009G175400 Sobic008G043200--Sobic001G089400 Sobic008G043200--Sobic010G040400 Sobic007G215200 Sobic007G215200 Sobic008G043200--Sobic007G215200 Sobic001G092500 Sobic001G092500 Sobic008G043200--Sobic001G092500 Sobic010G207800 Sobic010G207800 Sobic008G043200--Sobic010G207800 Sobic001G332000 Sobic001G332000 Sobic008G043200--Sobic001G332000 Sobic009G175400--Sobic010G276100 Sobic010G144700 Sobic010G144700 Sobic009G175400--Sobic010G144700 Sobic009G175400--Sobic010G040400 Sobic009G082900 Sobic009G082900 Sobic009G175400--Sobic009G082900 Sobic009G175400--Sobic001G332000 Sobic009G175400--Sobic008G043200 Sobic005G040700 Sobic005G040700 Sobic009G175400--Sobic005G040700 Sobic001G288400 Sobic001G288400 Sobic009G175400--Sobic001G288400 Sobic009G175400--Sobic005G145400 Sobic010G276100--Sobic009G175400 Sobic010G276100--Sobic010G040400 Sobic010G276100--Sobic010G144700 Sobic010G276100--Sobic009G082900 Sobic010G276100--Sobic001G092500 Sobic006G259100 Sobic006G259100 Sobic010G276100--Sobic006G259100 Sobic010G276100--Sobic005G145400 Sobic004G002800 Sobic004G002800 Sobic010G276100--Sobic004G002800 Sobic001G252900 Sobic001G252900 Sobic010G276100--Sobic001G252900 Sobic004G099200--Sobic001G135950 Sobic004G099200--Sobic001G525600 Sobic004G071900 Sobic004G071900 Sobic004G099200--Sobic004G071900 Sobic004G099200--Sobic005G145400 Sobic002G125100 Sobic002G125100 Sobic004G099200--Sobic002G125100 Sobic006G215500 Sobic006G215500 Sobic004G099200--Sobic006G215500 Sobic003G313200 Sobic003G313200 Sobic004G099200--Sobic003G313200 Sobic004G099200--Sobic010G276100 Sobic002G279900 Sobic002G279900 Sobic004G099200--Sobic002G279900 Sobic001G135950--Sobic004G071900 Sobic001G135950--Sobic002G125100 Sobic001G135950--Sobic006G215500 Sobic001G135950--Sobic004G099200 Sobic001G135950--Sobic002G279900 Sobic010G001200 Sobic010G001200 Sobic001G135950--Sobic010G001200 Sobic001G135950--Sobic001G525600 Sobic001G135950--Sobic005G145400 Sobic001G135950--Sobic003G313200 Sobic005G037700--Sobic003G420500 Sobic005G037700--Sobic001G089400 Sobic005G037700--Sobic004G192600 Sobic005G037700--Sobic005G145400 Sobic007G204200 Sobic007G204200 Sobic005G037700--Sobic007G204200 Sobic005G037700--Sobic007G197000 Sobic003G004000 Sobic003G004000 Sobic005G037700--Sobic003G004000 Sobic005G037700--Sobic008G043200 Sobic005G037700--Sobic001G525600 Sobic010G040400--Sobic009G175400 Sobic010G040400--Sobic010G276100 Sobic010G040400--Sobic010G144700 Sobic010G040400--Sobic001G332000 Sobic010G040400--Sobic005G040700 Sobic010G040400--Sobic001G092500 Sobic010G040400--Sobic009G082900 Sobic010G051000 Sobic010G051000 Sobic010G040400--Sobic010G051000 Sobic010G040400--Sobic001G288400 Sobic001G525600--Sobic004G099200 Sobic001G525600--Sobic001G135950 Sobic001G525600--Sobic005G145400 Sobic001G525600--Sobic003G313200 Sobic001G525600--Sobic003G420500 Sobic001G525600--Sobic004G071900 Sobic001G525600--Sobic002G279900 Sobic001G525600--Sobic002G125100 Sobic001G525600--Sobic006G215500
Octagon: transcription factors


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