Gene annotation
Transcriptome id Sobic.008G071300.1,Sobic.008G071300.2
Synonym Sb08g006310
Functional annotation protein phosphatase 2C, putative, expressed
UniProt A0A1Z5R5B9 , C5YTJ5
Pfam PF13672 PF00481
Panther DB PTHR13832 PTHR13832:SF327
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K17506; PPM1L, protein phosphatase 1L
Gene Ontology GO:0006470; protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity GO:0003824catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT1G67820 : Protein phosphatase 2C family protein,phosphatase 2C5
RAP-DB (Rice) LOC_Os12g09640.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a040613
Brachypodium KQJ91908
Barley HORVU4Hr1G015370.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G267100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.002G170100 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
3 Sobic.003G114600 TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
4 Sobic.002G283200 expressed protein -
5 Sobic.003G290500 profilin domain containing protein, expressed K05759: profilin
6 Sobic.001G039100 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
7 Sobic.002G340600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed K17871: NADH:ubiquinone reductase (non-electrogenic)
8 Sobic.006G105100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
9 Sobic.001G503600 expressed protein -
10 Sobic.002G380300 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
11 Sobic.010G111000 - -
12 Sobic.005G144000 glycosyltransferase, putative, expressed -
13 Sobic.004G180100 - -
14 Sobic.004G042501 - -
15 Sobic.009G090566 - -
16 Sobic.003G218100 - -
17 Sobic.005G170400 OsFBDUF58 - F-box and DUF domain containing protein, expressed -
18 Sobic.006G069766 - -
19 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
20 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase


Gene co-expression network
sample Sobic008G071300 Sobic008G071300 Sobic006G267100 Sobic006G267100 Sobic008G071300--Sobic006G267100 Sobic002G170100 Sobic002G170100 Sobic008G071300--Sobic002G170100 Sobic003G114600 Sobic003G114600 Sobic008G071300--Sobic003G114600 Sobic002G283200 Sobic002G283200 Sobic008G071300--Sobic002G283200 Sobic003G290500 Sobic003G290500 Sobic008G071300--Sobic003G290500 Sobic001G039100 Sobic001G039100 Sobic008G071300--Sobic001G039100 Sobic002G340600 Sobic002G340600 Sobic008G071300--Sobic002G340600 Sobic006G105100 Sobic006G105100 Sobic008G071300--Sobic006G105100 Sobic001G503600 Sobic001G503600 Sobic008G071300--Sobic001G503600 Sobic006G267100--Sobic008G071300 Sobic001G414650 Sobic001G414650 Sobic006G267100--Sobic001G414650 Sobic006G267100--Sobic002G340600 Sobic006G267100--Sobic003G114600 Sobic006G267100--Sobic002G283200 Sobic006G267100--Sobic006G105100 Sobic004G042501 Sobic004G042501 Sobic006G267100--Sobic004G042501 Sobic002G380300 Sobic002G380300 Sobic006G267100--Sobic002G380300 Sobic006G267100--Sobic003G290500 Sobic009G242200 Sobic009G242200 Sobic002G170100--Sobic009G242200 Sobic002G170100--Sobic002G380300 Sobic005G170400 Sobic005G170400 Sobic002G170100--Sobic005G170400 Sobic004G358000 Sobic004G358000 Sobic002G170100--Sobic004G358000 Sobic003G218100 Sobic003G218100 Sobic002G170100--Sobic003G218100 Sobic002G170100--Sobic003G290500 Sobic003G304600 Sobic003G304600 Sobic002G170100--Sobic003G304600 Sobic005G144000 Sobic005G144000 Sobic002G170100--Sobic005G144000 Sobic002G170100--Sobic002G283200 Sobic003G114600--Sobic002G283200 Sobic001G024800 Sobic001G024800 Sobic003G114600--Sobic001G024800 Sobic004G024000 Sobic004G024000 Sobic003G114600--Sobic004G024000 Sobic002G150400 Sobic002G150400 Sobic003G114600--Sobic002G150400 Sobic004G134600 Sobic004G134600 Sobic003G114600--Sobic004G134600 Sobic004G029032 Sobic004G029032 Sobic003G114600--Sobic004G029032 Sobic008G028200 Sobic008G028200 Sobic003G114600--Sobic008G028200 Sobic006G171500 Sobic006G171500 Sobic003G114600--Sobic006G171500 Sobic010G229801 Sobic010G229801 Sobic003G114600--Sobic010G229801 Sobic002G283200--Sobic003G114600 Sobic002G283200--Sobic001G024800 Sobic006G263500 Sobic006G263500 Sobic002G283200--Sobic006G263500 Sobic010G006900 Sobic010G006900 Sobic002G283200--Sobic010G006900 Sobic005G025600 Sobic005G025600 Sobic002G283200--Sobic005G025600 Sobic001G452500 Sobic001G452500 Sobic002G283200--Sobic001G452500 Sobic008G027900 Sobic008G027900 Sobic002G283200--Sobic008G027900 Sobic005G023700 Sobic005G023700 Sobic002G283200--Sobic005G023700 Sobic001G252900 Sobic001G252900 Sobic002G283200--Sobic001G252900 Sobic003G290500--Sobic002G380300 Sobic003G290500--Sobic006G105100 Sobic001G041600 Sobic001G041600 Sobic003G290500--Sobic001G041600 Sobic003G290500--Sobic003G304600 Sobic008G176500 Sobic008G176500 Sobic003G290500--Sobic008G176500 Sobic003G290500--Sobic002G283200 Sobic007G222100 Sobic007G222100 Sobic003G290500--Sobic007G222100 Sobic010G051000 Sobic010G051000 Sobic003G290500--Sobic010G051000 Sobic009G203900 Sobic009G203900 Sobic003G290500--Sobic009G203900 Sobic002G404600 Sobic002G404600 Sobic001G039100--Sobic002G404600 Sobic007G196700 Sobic007G196700 Sobic001G039100--Sobic007G196700 Sobic002G381500 Sobic002G381500 Sobic001G039100--Sobic002G381500 Sobic002G308900 Sobic002G308900 Sobic001G039100--Sobic002G308900 Sobic009G110600 Sobic009G110600 Sobic001G039100--Sobic009G110600 Sobic001G039100--Sobic006G105100 Sobic001G039100--Sobic002G380300 Sobic001G039100--Sobic001G414650 Sobic004G290500 Sobic004G290500 Sobic001G039100--Sobic004G290500 Sobic002G340600--Sobic006G105100 Sobic002G340600--Sobic002G380300 Sobic002G340600--Sobic001G041600 Sobic006G005300 Sobic006G005300 Sobic002G340600--Sobic006G005300 Sobic003G445300 Sobic003G445300 Sobic002G340600--Sobic003G445300 Sobic006G074150 Sobic006G074150 Sobic002G340600--Sobic006G074150 Sobic005G220400 Sobic005G220400 Sobic002G340600--Sobic005G220400 Sobic005G207700 Sobic005G207700 Sobic002G340600--Sobic005G207700 Sobic002G340600--Sobic003G304600 Sobic006G105100--Sobic002G380300 Sobic006G105100--Sobic004G290500 Sobic001G261416 Sobic001G261416 Sobic006G105100--Sobic001G261416 Sobic001G329200 Sobic001G329200 Sobic006G105100--Sobic001G329200 Sobic010G090200 Sobic010G090200 Sobic006G105100--Sobic010G090200 Sobic006G105100--Sobic001G041600 Sobic001G332000 Sobic001G332000 Sobic006G105100--Sobic001G332000 Sobic001G171300 Sobic001G171300 Sobic006G105100--Sobic001G171300 Sobic001G287400 Sobic001G287400 Sobic006G105100--Sobic001G287400 Sobic001G503600--Sobic001G414650 Sobic001G503600--Sobic008G071300 Sobic001G503600--Sobic005G144000 Sobic001G503600--Sobic009G242200 Sobic001G503600--Sobic002G170100 Sobic001G503600--Sobic001G039100 Sobic001G503600--Sobic002G340600 Sobic001G503600--Sobic002G380300 Sobic001G503600--Sobic002G404600
Octagon: transcription factors


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