Gene annotation
Transcriptome id Sobic.001G039100.1
Synonym Sb01g003600
Functional annotation oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
UniProt C5WV57
Pfam PF13532
Panther DB PTHR16557 PTHR16557:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G14160 : 2-oxoglutarate-dependent dioxygenase family protein
RAP-DB (Rice) LOC_Os03g60190.1 : oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a016454
Brachypodium -
Barley HORVU5Hr1G111850.1 , HORVU5Hr1G111850.2
Wheat TraesCS5A02G470000 , TraesCS5B02G482500 , TraesCS5D02G482900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G404600 expressed protein -
2 Sobic.007G196700 expressed protein -
3 Sobic.002G381500 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
4 Sobic.002G308900 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
5 Sobic.009G110600 OsFBX422 - F-box domain containing protein, expressed -
6 Sobic.006G105100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
7 Sobic.002G380300 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
8 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase
9 Sobic.004G290500 actin-depolymerizing factor, putative, expressed K05765: cofilin
10 Sobic.001G357400 emp24/gp25L/p24 family protein, putative, expressed -
11 Sobic.002G340600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed K17871: NADH:ubiquinone reductase (non-electrogenic)
12 Sobic.007G204200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.001G240700 - -
14 Sobic.001G089400 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
15 Sobic.009G182100 cysteine proteinase inhibitor precursor protein, putative, expressed -
16 Sobic.004G192600 LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.003G004000 - -
18 Sobic.010G121700 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.002G283200 expressed protein -
20 Sobic.005G037700 OsFBX378 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic001G039100 Sobic001G039100 Sobic002G404600 Sobic002G404600 Sobic001G039100--Sobic002G404600 Sobic007G196700 Sobic007G196700 Sobic001G039100--Sobic007G196700 Sobic002G381500 Sobic002G381500 Sobic001G039100--Sobic002G381500 Sobic002G308900 Sobic002G308900 Sobic001G039100--Sobic002G308900 Sobic009G110600 Sobic009G110600 Sobic001G039100--Sobic009G110600 Sobic006G105100 Sobic006G105100 Sobic001G039100--Sobic006G105100 Sobic002G380300 Sobic002G380300 Sobic001G039100--Sobic002G380300 Sobic001G414650 Sobic001G414650 Sobic001G039100--Sobic001G414650 Sobic004G290500 Sobic004G290500 Sobic001G039100--Sobic004G290500 Sobic007G204200 Sobic007G204200 Sobic002G404600--Sobic007G204200 Sobic002G404600--Sobic004G290500 Sobic001G089400 Sobic001G089400 Sobic002G404600--Sobic001G089400 Sobic005G037700 Sobic005G037700 Sobic002G404600--Sobic005G037700 Sobic004G192600 Sobic004G192600 Sobic002G404600--Sobic004G192600 Sobic003G004000 Sobic003G004000 Sobic002G404600--Sobic003G004000 Sobic007G197000 Sobic007G197000 Sobic002G404600--Sobic007G197000 Sobic002G404600--Sobic002G381500 Sobic002G404600--Sobic002G380300 Sobic001G143700 Sobic001G143700 Sobic007G196700--Sobic001G143700 Sobic005G148000 Sobic005G148000 Sobic007G196700--Sobic005G148000 Sobic001G240700 Sobic001G240700 Sobic007G196700--Sobic001G240700 Sobic005G040100 Sobic005G040100 Sobic007G196700--Sobic005G040100 Sobic002G097300 Sobic002G097300 Sobic007G196700--Sobic002G097300 Sobic002G006200 Sobic002G006200 Sobic007G196700--Sobic002G006200 Sobic008G138400 Sobic008G138400 Sobic007G196700--Sobic008G138400 Sobic005G189100 Sobic005G189100 Sobic007G196700--Sobic005G189100 Sobic007G196700--Sobic009G110600 Sobic002G381500--Sobic002G404600 Sobic002G381500--Sobic007G204200 Sobic002G381500--Sobic007G197000 Sobic002G381500--Sobic005G037700 Sobic002G381500--Sobic009G110600 Sobic010G121700 Sobic010G121700 Sobic002G381500--Sobic010G121700 Sobic002G381500--Sobic004G192600 Sobic002G381500--Sobic003G004000 Sobic002G381500--Sobic001G089400 Sobic001G227000 Sobic001G227000 Sobic002G308900--Sobic001G227000 Sobic002G308900--Sobic001G039100 Sobic002G308900--Sobic002G404600 Sobic006G189300 Sobic006G189300 Sobic002G308900--Sobic006G189300 Sobic002G308900--Sobic002G381500 Sobic002G308900--Sobic007G204200 Sobic007G007700 Sobic007G007700 Sobic002G308900--Sobic007G007700 Sobic002G308900--Sobic009G110600 Sobic006G272400 Sobic006G272400 Sobic002G308900--Sobic006G272400 Sobic009G182100 Sobic009G182100 Sobic009G110600--Sobic009G182100 Sobic002G156400 Sobic002G156400 Sobic009G110600--Sobic002G156400 Sobic009G110600--Sobic010G121700 Sobic009G110600--Sobic008G138400 Sobic001G089300 Sobic001G089300 Sobic009G110600--Sobic001G089300 Sobic005G140900 Sobic005G140900 Sobic009G110600--Sobic005G140900 Sobic009G110600--Sobic005G189100 Sobic009G234900 Sobic009G234900 Sobic009G110600--Sobic009G234900 Sobic009G047100 Sobic009G047100 Sobic009G110600--Sobic009G047100 Sobic006G105100--Sobic002G380300 Sobic006G105100--Sobic004G290500 Sobic001G261416 Sobic001G261416 Sobic006G105100--Sobic001G261416 Sobic001G329200 Sobic001G329200 Sobic006G105100--Sobic001G329200 Sobic010G090200 Sobic010G090200 Sobic006G105100--Sobic010G090200 Sobic001G041600 Sobic001G041600 Sobic006G105100--Sobic001G041600 Sobic001G332000 Sobic001G332000 Sobic006G105100--Sobic001G332000 Sobic001G171300 Sobic001G171300 Sobic006G105100--Sobic001G171300 Sobic001G287400 Sobic001G287400 Sobic006G105100--Sobic001G287400 Sobic002G380300--Sobic006G105100 Sobic002G380300--Sobic004G290500 Sobic008G176500 Sobic008G176500 Sobic002G380300--Sobic008G176500 Sobic002G380300--Sobic001G041600 Sobic010G016200 Sobic010G016200 Sobic002G380300--Sobic010G016200 Sobic001G130500 Sobic001G130500 Sobic002G380300--Sobic001G130500 Sobic002G380300--Sobic001G332000 Sobic002G380300--Sobic001G329200 Sobic010G040400 Sobic010G040400 Sobic002G380300--Sobic010G040400 Sobic001G357400 Sobic001G357400 Sobic001G414650--Sobic001G357400 Sobic001G414650--Sobic002G404600 Sobic008G055200 Sobic008G055200 Sobic001G414650--Sobic008G055200 Sobic001G414650--Sobic002G381500 Sobic007G070900 Sobic007G070900 Sobic001G414650--Sobic007G070900 Sobic001G414650--Sobic006G105100 Sobic004G054900 Sobic004G054900 Sobic001G414650--Sobic004G054900 Sobic001G414650--Sobic009G110600 Sobic001G337100 Sobic001G337100 Sobic001G414650--Sobic001G337100 Sobic010G207800 Sobic010G207800 Sobic004G290500--Sobic010G207800 Sobic007G215200 Sobic007G215200 Sobic004G290500--Sobic007G215200 Sobic005G006100 Sobic005G006100 Sobic004G290500--Sobic005G006100 Sobic001G167300 Sobic001G167300 Sobic004G290500--Sobic001G167300 Sobic001G192300 Sobic001G192300 Sobic004G290500--Sobic001G192300 Sobic004G290500--Sobic010G090200 Sobic004G290500--Sobic001G261416 Sobic007G014000 Sobic007G014000 Sobic004G290500--Sobic007G014000 Sobic010G216100 Sobic010G216100 Sobic004G290500--Sobic010G216100
Octagon: transcription factors


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