Gene annotation
Transcriptome id Sobic.002G308900.1
Synonym Sb02g033880
Functional annotation ubiquitin fusion protein, putative, expressed
UniProt C5X992
Pfam PF11976 PF01020
Panther DB PTHR10666
NCBI CDD KOG0003; Ubiquitin/60s ribosomal protein L40 fusion
KEGG Orthology K02927; RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G36170 : Ubiquitin supergroup;Ribosomal protein L40e
RAP-DB (Rice) LOC_Os09g27930.1 : ubiquitin fusion protein, putative, expressed
MaizeGDB (Corn) Zm00025a042947 , Zm00025a014723 , Zm00025a005173 , Zm00025a001454 , Zm00025a050018 , Zm00025a001458 , Zm00025a048116 , Zm00025a036147 , Zm00025a039850 , Zm00025a013490
Brachypodium KQJ91591 , KQK04218 , KQK17173 , KQK06725 , KQK04203 , KQK17147 , PNT77709 , PNT77708 , KQK04197 , KQJ97255 , KQK04204 , KQK22710 , KQK07353 , KQJ89932 , KQJ93343 , KQK16153
Barley HORVU4Hr1G065100.2 , HORVU4Hr1G065100.3 , HORVU7Hr1G113500.1 , HORVU4Hr1G065100.1 , HORVU1Hr1G043930.6 , HORVU1Hr1G043930.7 , HORVU1Hr1G043930.4 , HORVU1Hr1G043930.5 , HORVU1Hr1G043930.2 , HORVU1Hr1G043930.3 , HORVU1Hr1G043930.1 , HORVU1Hr1G043930.8 , HORVU1Hr1G043930.9 , HORVU2Hr1G104410.8 , HORVU2Hr1G104410.9 , HORVU2Hr1G104410.1 , HORVU2Hr1G104410.2 , HORVU2Hr1G104410.3 , HORVU2Hr1G104410.4 , HORVU2Hr1G104410.5 , HORVU2Hr1G104410.6 , HORVU2Hr1G104410.7 , HORVU6Hr1G029050.1 , HORVU6Hr1G029050.4 , HORVU1Hr1G043930.10 , HORVU1Hr1G043930.11 , HORVU6Hr1G020140.8 , HORVU6Hr1G020140.7 , HORVU6Hr1G020140.6 , HORVU6Hr1G020140.5 , HORVU6Hr1G020140.4 , HORVU6Hr1G020140.3 , HORVU6Hr1G020140.2 , HORVU6Hr1G020140.1 , HORVU5Hr1G072680.1 , HORVU5Hr1G072680.2 , HORVU5Hr1G072680.3 , HORVU1Hr1G023660.1 , HORVU1Hr1G023660.2 , HORVU1Hr1G023660.3 , HORVU7Hr1G029070.1 , HORVU2Hr1G104440.3 , HORVU2Hr1G104440.2 , HORVU2Hr1G104440.1 , HORVU2Hr1G104440.7 , HORVU2Hr1G104440.6 , HORVU2Hr1G104440.5 , HORVU2Hr1G104440.4 , HORVU2Hr1G104410.12 , HORVU2Hr1G104410.13 , HORVU2Hr1G104410.10 , HORVU2Hr1G104410.11 , HORVU2Hr1G104410.16 , HORVU2Hr1G104410.17 , HORVU2Hr1G104410.14 , HORVU2Hr1G104410.15 , HORVU2Hr1G104410.18 , HORVU2Hr1G104410.19 , HORVU2Hr1G104390.9 , HORVU6Hr1G026260.19 , HORVU6Hr1G026260.16 , HORVU6Hr1G026260.17 , HORVU6Hr1G026260.14 , HORVU6Hr1G026260.15 , HORVU6Hr1G026260.12 , HORVU6Hr1G026260.13 , HORVU6Hr1G026260.10 , HORVU6Hr1G026260.11 , HORVU1Hr1G087690.10 , HORVU6Hr1G026200.6 , HORVU6Hr1G026200.7 , HORVU6Hr1G026200.5 , HORVU6Hr1G026200.2 , HORVU6Hr1G026200.1 , HORVU6Hr1G026200.8 , HORVU6Hr1G026200.9 , HORVU3Hr1G014150.2 , HORVU3Hr1G014150.3 , HORVU3Hr1G014150.1 , HORVU3Hr1G014150.5 , HORVU6Hr1G026260.8 , HORVU6Hr1G026260.9 , HORVU6Hr1G026260.6 , HORVU6Hr1G026260.7 , HORVU6Hr1G026260.1 , HORVU6Hr1G026260.2 , HORVU1Hr1G087690.9 , HORVU1Hr1G087690.8 , HORVU1Hr1G087690.3 , HORVU1Hr1G087690.2 , HORVU1Hr1G087690.1 , HORVU1Hr1G087690.7 , HORVU1Hr1G087690.6 , HORVU1Hr1G087690.5 , HORVU1Hr1G087690.4 , HORVU7Hr1G103330.13 , HORVU7Hr1G103330.14 , HORVU6Hr1G026200.14 , HORVU6Hr1G026200.10 , HORVU6Hr1G026200.11 , HORVU6Hr1G026200.12 , HORVU6Hr1G026200.13 , HORVU2Hr1G104410.23 , HORVU2Hr1G104410.22 , HORVU2Hr1G104410.21 , HORVU2Hr1G104410.20 , HORVU2Hr1G104410.26 , HORVU2Hr1G104410.25 , HORVU2Hr1G104410.24 , HORVU6Hr1G026260.21 , HORVU6Hr1G026260.20 , HORVU7Hr1G103330.6 , HORVU7Hr1G103330.3 , HORVU7Hr1G103160.1 , HORVU7Hr1G103160.2 , HORVU7Hr1G103160.3 , HORVU7Hr1G103160.4 , HORVU7Hr1G029100.1 , HORVU6Hr1G021700.6 , HORVU6Hr1G021700.4 , HORVU6Hr1G021700.5 , HORVU6Hr1G021700.2 , HORVU6Hr1G021700.3 , HORVU6Hr1G021700.1 , HORVU7Hr1G103170.7 , HORVU7Hr1G103170.6 , HORVU7Hr1G103170.5 , HORVU7Hr1G103170.4 , HORVU7Hr1G103170.2 , HORVU7Hr1G103170.1 , HORVU7Hr1G103170.9 , HORVU7Hr1G103170.8 , HORVU7Hr1G029150.2 , HORVU7Hr1G029150.1 , HORVU1Hr1G087690.17 , HORVU1Hr1G087690.15 , HORVU1Hr1G087690.14 , HORVU6Hr1G029050.2 , HORVU6Hr1G029050.3 , HORVU2Hr1G104390.11 , HORVU2Hr1G104390.10 , HORVU6Hr1G029050.6 , HORVU6Hr1G029050.7 , HORVU6Hr1G029050.5 , HORVU6Hr1G029050.8 , HORVU6Hr1G029050.9 , HORVU3Hr1G014180.5 , HORVU3Hr1G014180.1 , HORVU3Hr1G014180.3 , HORVU3Hr1G014180.2 , HORVU4Hr1G061900.4 , HORVU4Hr1G061900.2 , HORVU4Hr1G061900.3 , HORVU4Hr1G061900.1 , HORVU1Hr1G087690.13 , HORVU1Hr1G087690.12 , HORVU1Hr1G087690.11 , HORVU1Hr1G087690.16
Wheat TraesCS6D02G109600 , TraesCS2B02G107600 , TraesCS7D02G474300 , TraesCS6A02G136700 , TraesCS4D02G006900 , TraesCS6B02G148000 , TraesCS2D02G459100 , TraesCS5A02G196400 , TraesCS2D02G405500 , TraesCS2A02G458000 , TraesCS2B02G480600 , TraesCS4B02G233100 , TraesCS4B02G233100 , TraesCS6A02G119700 , TraesCS6A02G119700 , TraesCS2D02G458600 , TraesCS5A02G196700 , TraesCS4A02G086400 , TraesCS5B02G187200 , TraesCS2B02G107800 , TraesCS4D02G218400 , TraesCS7D02G474200 , TraesCS4B02G218100 , TraesCS2D02G580700 , TraesCS6A02G087100 , TraesCS6B02G164700 , TraesCS6B02G164700 , TraesCS6B02G176000 , TraesCS4D02G218300 , TraesCS4B02G008400 , TraesCS6B02G110300 , TraesCS7B02G413800 , TraesCS6D02G136800 , TraesCS6A02G112400 , TraesCS5D02G269800 , TraesCS6A02G147500 , TraesCS4D02G234300 , TraesCS4D02G234300 , TraesCS5D02G194700 , TraesCS2A02G458800 , TraesCS4A02G086300 , TraesCS2B02G480300 , TraesCS2B02G480400 , TraesCS7D02G494400 , TraesCS6D02G125600 , TraesCS4A02G077000 , TraesCS4A02G077000 , TraesCS2A02G408200 , TraesCS7A02G506300 , TraesCS4B02G218000 , TraesCS2A02G458100 , TraesCS5B02G260700 , TraesCS4A02G306500 , TraesCS7A02G487500
Populus PNT28506


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G227000 zinc finger family protein, putative, expressed -
2 Sobic.001G039100 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
3 Sobic.002G404600 expressed protein -
4 Sobic.006G189300 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
5 Sobic.002G381500 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
6 Sobic.007G204200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.007G007700 OsFBL38 - F-box domain and LRR containing protein, expressed -
8 Sobic.009G110600 OsFBX422 - F-box domain containing protein, expressed -
9 Sobic.006G272400 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
10 Sobic.008G074100 - -
11 Sobic.005G037700 OsFBX378 - F-box domain containing protein, expressed -
12 Sobic.010G257800 peptidyl-prolyl cis-trans isomerase, putative, expressed -
13 Sobic.001G525600 fringe-related protein, putative, expressed -
14 Sobic.002G279900 beta-galactosidase precursor, putative, expressed -
15 Sobic.003G420500 Ca ATPase 3(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
16 Sobic.001G135950 - -
17 Sobic.010G001200 CCT/B-box zinc finger protein, putative, expressed -
18 Sobic.004G187400 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
19 Sobic.007G197000 "Candidate orthologue to the wheat Pm40 gene, probable glucan endo-1,3-betaglucosidase A6"(PubMedID : 27755575)@glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
20 Sobic.009G098400 rho GDP-dissociation inhibitor 1, putative, expressed K12462: ARHGDI, Rho GDP-dissociation inhibitor


Gene co-expression network
sample Sobic002G308900 Sobic002G308900 Sobic001G227000 Sobic001G227000 Sobic002G308900--Sobic001G227000 Sobic001G039100 Sobic001G039100 Sobic002G308900--Sobic001G039100 Sobic002G404600 Sobic002G404600 Sobic002G308900--Sobic002G404600 Sobic006G189300 Sobic006G189300 Sobic002G308900--Sobic006G189300 Sobic002G381500 Sobic002G381500 Sobic002G308900--Sobic002G381500 Sobic007G204200 Sobic007G204200 Sobic002G308900--Sobic007G204200 Sobic007G007700 Sobic007G007700 Sobic002G308900--Sobic007G007700 Sobic009G110600 Sobic009G110600 Sobic002G308900--Sobic009G110600 Sobic006G272400 Sobic006G272400 Sobic002G308900--Sobic006G272400 Sobic001G227000--Sobic002G308900 Sobic001G227000--Sobic006G189300 Sobic001G227000--Sobic002G381500 Sobic001G227000--Sobic002G404600 Sobic001G538425 Sobic001G538425 Sobic001G227000--Sobic001G538425 Sobic001G227000--Sobic001G039100 Sobic006G170500 Sobic006G170500 Sobic001G227000--Sobic006G170500 Sobic001G227000--Sobic007G204200 Sobic007G081100 Sobic007G081100 Sobic001G227000--Sobic007G081100 Sobic001G039100--Sobic002G404600 Sobic007G196700 Sobic007G196700 Sobic001G039100--Sobic007G196700 Sobic001G039100--Sobic002G381500 Sobic001G039100--Sobic002G308900 Sobic001G039100--Sobic009G110600 Sobic006G105100 Sobic006G105100 Sobic001G039100--Sobic006G105100 Sobic002G380300 Sobic002G380300 Sobic001G039100--Sobic002G380300 Sobic001G414650 Sobic001G414650 Sobic001G039100--Sobic001G414650 Sobic004G290500 Sobic004G290500 Sobic001G039100--Sobic004G290500 Sobic002G404600--Sobic007G204200 Sobic002G404600--Sobic004G290500 Sobic001G089400 Sobic001G089400 Sobic002G404600--Sobic001G089400 Sobic005G037700 Sobic005G037700 Sobic002G404600--Sobic005G037700 Sobic004G192600 Sobic004G192600 Sobic002G404600--Sobic004G192600 Sobic003G004000 Sobic003G004000 Sobic002G404600--Sobic003G004000 Sobic007G197000 Sobic007G197000 Sobic002G404600--Sobic007G197000 Sobic002G404600--Sobic002G381500 Sobic002G404600--Sobic002G380300 Sobic006G189300--Sobic002G308900 Sobic006G189300--Sobic001G227000 Sobic006G189300--Sobic002G404600 Sobic006G189300--Sobic001G039100 Sobic006G189300--Sobic002G381500 Sobic006G189300--Sobic007G007700 Sobic006G204500 Sobic006G204500 Sobic006G189300--Sobic006G204500 Sobic006G189300--Sobic007G204200 Sobic006G189300--Sobic001G538425 Sobic002G381500--Sobic002G404600 Sobic002G381500--Sobic007G204200 Sobic002G381500--Sobic007G197000 Sobic002G381500--Sobic005G037700 Sobic002G381500--Sobic009G110600 Sobic010G121700 Sobic010G121700 Sobic002G381500--Sobic010G121700 Sobic002G381500--Sobic004G192600 Sobic002G381500--Sobic003G004000 Sobic002G381500--Sobic001G089400 Sobic007G204200--Sobic005G037700 Sobic007G204200--Sobic004G192600 Sobic008G074100 Sobic008G074100 Sobic007G204200--Sobic008G074100 Sobic007G204200--Sobic001G089400 Sobic007G204200--Sobic003G004000 Sobic007G204200--Sobic007G197000 Sobic003G420500 Sobic003G420500 Sobic007G204200--Sobic003G420500 Sobic007G204200--Sobic010G121700 Sobic003G070400 Sobic003G070400 Sobic007G204200--Sobic003G070400 Sobic007G007700--Sobic003G420500 Sobic002G279900 Sobic002G279900 Sobic007G007700--Sobic002G279900 Sobic001G135950 Sobic001G135950 Sobic007G007700--Sobic001G135950 Sobic007G007700--Sobic005G037700 Sobic001G525600 Sobic001G525600 Sobic007G007700--Sobic001G525600 Sobic010G001200 Sobic010G001200 Sobic007G007700--Sobic010G001200 Sobic002G125100 Sobic002G125100 Sobic007G007700--Sobic002G125100 Sobic004G099200 Sobic004G099200 Sobic007G007700--Sobic004G099200 Sobic005G145400 Sobic005G145400 Sobic007G007700--Sobic005G145400 Sobic009G182100 Sobic009G182100 Sobic009G110600--Sobic009G182100 Sobic002G156400 Sobic002G156400 Sobic009G110600--Sobic002G156400 Sobic009G110600--Sobic010G121700 Sobic008G138400 Sobic008G138400 Sobic009G110600--Sobic008G138400 Sobic001G089300 Sobic001G089300 Sobic009G110600--Sobic001G089300 Sobic005G140900 Sobic005G140900 Sobic009G110600--Sobic005G140900 Sobic005G189100 Sobic005G189100 Sobic009G110600--Sobic005G189100 Sobic009G234900 Sobic009G234900 Sobic009G110600--Sobic009G234900 Sobic009G047100 Sobic009G047100 Sobic009G110600--Sobic009G047100 Sobic001G202900 Sobic001G202900 Sobic006G272400--Sobic001G202900 Sobic009G165900 Sobic009G165900 Sobic006G272400--Sobic009G165900 Sobic004G158100 Sobic004G158100 Sobic006G272400--Sobic004G158100 Sobic001G222800 Sobic001G222800 Sobic006G272400--Sobic001G222800 Sobic008G075800 Sobic008G075800 Sobic006G272400--Sobic008G075800 Sobic003G286000 Sobic003G286000 Sobic006G272400--Sobic003G286000 Sobic004G336401 Sobic004G336401 Sobic006G272400--Sobic004G336401 Sobic008G097800 Sobic008G097800 Sobic006G272400--Sobic008G097800 Sobic002G145400 Sobic002G145400 Sobic006G272400--Sobic002G145400
Octagon: transcription factors


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