Gene annotation
Transcriptome id Sobic.001G227000.1
Synonym Sb01g019880
Functional annotation zinc finger family protein, putative, expressed
UniProt C5WZD9
Pfam PF14624 PF17123 PF00092
Panther DB PTHR10579 PTHR10579:SF51
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G60710 : Zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os10g32750.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT78231
Barley HORVU4Hr1G086310.1 , HORVU5Hr1G076190.1 , HORVU5Hr1G076190.2
Wheat TraesCS4D02G351600 , TraesCS5B02G338500 , TraesCS3A02G393700 , TraesCS2D02G459400 , TraesCS4B02G344200 , TraesCS2B02G515000 , TraesCS7A02G423300 , TraesCS5A02G513000 , TraesCS4D02G339300 , TraesCS1A02G421500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G308900 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
2 Sobic.006G189300 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
3 Sobic.002G381500 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
4 Sobic.002G404600 expressed protein -
5 Sobic.001G538425 - -
6 Sobic.001G039100 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
7 Sobic.006G170500 aquaporin protein, putative, expressed K09873: aquaporin TIP
8 Sobic.007G204200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.007G081100 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
10 Sobic.009G110600 OsFBX422 - F-box domain containing protein, expressed -
11 Sobic.007G007700 OsFBL38 - F-box domain and LRR containing protein, expressed -
12 Sobic.002G204500 Phospholipase D alpha 2 PLD Alpha 2 (At)(PubMedID : 27208977)@phospholipase D, putative, expressed K01115: phospholipase D1/2
13 Sobic.008G074100 - -
14 Sobic.007G031200 - -
15 Sobic.003G191200 expressed protein -
16 Sobic.004G057300 expressed protein -
17 Sobic.002G188300 - -
18 Sobic.005G037700 OsFBX378 - F-box domain containing protein, expressed -
19 Sobic.002G176000 membrane protein, putative, expressed -
20 Sobic.007G198900 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic001G227000 Sobic001G227000 Sobic002G308900 Sobic002G308900 Sobic001G227000--Sobic002G308900 Sobic006G189300 Sobic006G189300 Sobic001G227000--Sobic006G189300 Sobic002G381500 Sobic002G381500 Sobic001G227000--Sobic002G381500 Sobic002G404600 Sobic002G404600 Sobic001G227000--Sobic002G404600 Sobic001G538425 Sobic001G538425 Sobic001G227000--Sobic001G538425 Sobic001G039100 Sobic001G039100 Sobic001G227000--Sobic001G039100 Sobic006G170500 Sobic006G170500 Sobic001G227000--Sobic006G170500 Sobic007G204200 Sobic007G204200 Sobic001G227000--Sobic007G204200 Sobic007G081100 Sobic007G081100 Sobic001G227000--Sobic007G081100 Sobic002G308900--Sobic001G227000 Sobic002G308900--Sobic001G039100 Sobic002G308900--Sobic002G404600 Sobic002G308900--Sobic006G189300 Sobic002G308900--Sobic002G381500 Sobic002G308900--Sobic007G204200 Sobic007G007700 Sobic007G007700 Sobic002G308900--Sobic007G007700 Sobic009G110600 Sobic009G110600 Sobic002G308900--Sobic009G110600 Sobic006G272400 Sobic006G272400 Sobic002G308900--Sobic006G272400 Sobic006G189300--Sobic002G308900 Sobic006G189300--Sobic001G227000 Sobic006G189300--Sobic002G404600 Sobic006G189300--Sobic001G039100 Sobic006G189300--Sobic002G381500 Sobic006G189300--Sobic007G007700 Sobic006G204500 Sobic006G204500 Sobic006G189300--Sobic006G204500 Sobic006G189300--Sobic007G204200 Sobic006G189300--Sobic001G538425 Sobic002G381500--Sobic002G404600 Sobic002G381500--Sobic007G204200 Sobic007G197000 Sobic007G197000 Sobic002G381500--Sobic007G197000 Sobic005G037700 Sobic005G037700 Sobic002G381500--Sobic005G037700 Sobic002G381500--Sobic009G110600 Sobic010G121700 Sobic010G121700 Sobic002G381500--Sobic010G121700 Sobic004G192600 Sobic004G192600 Sobic002G381500--Sobic004G192600 Sobic003G004000 Sobic003G004000 Sobic002G381500--Sobic003G004000 Sobic001G089400 Sobic001G089400 Sobic002G381500--Sobic001G089400 Sobic002G404600--Sobic007G204200 Sobic004G290500 Sobic004G290500 Sobic002G404600--Sobic004G290500 Sobic002G404600--Sobic001G089400 Sobic002G404600--Sobic005G037700 Sobic002G404600--Sobic004G192600 Sobic002G404600--Sobic003G004000 Sobic002G404600--Sobic007G197000 Sobic002G404600--Sobic002G381500 Sobic002G380300 Sobic002G380300 Sobic002G404600--Sobic002G380300 Sobic007G031200 Sobic007G031200 Sobic001G538425--Sobic007G031200 Sobic003G191200 Sobic003G191200 Sobic001G538425--Sobic003G191200 Sobic007G198900 Sobic007G198900 Sobic001G538425--Sobic007G198900 Sobic001G538425--Sobic007G081100 Sobic007G082100 Sobic007G082100 Sobic001G538425--Sobic007G082100 Sobic005G058600 Sobic005G058600 Sobic001G538425--Sobic005G058600 Sobic002G204500 Sobic002G204500 Sobic001G538425--Sobic002G204500 Sobic004G100300 Sobic004G100300 Sobic001G538425--Sobic004G100300 Sobic003G070400 Sobic003G070400 Sobic001G538425--Sobic003G070400 Sobic001G039100--Sobic002G404600 Sobic007G196700 Sobic007G196700 Sobic001G039100--Sobic007G196700 Sobic001G039100--Sobic002G381500 Sobic001G039100--Sobic002G308900 Sobic001G039100--Sobic009G110600 Sobic006G105100 Sobic006G105100 Sobic001G039100--Sobic006G105100 Sobic001G039100--Sobic002G380300 Sobic001G414650 Sobic001G414650 Sobic001G039100--Sobic001G414650 Sobic001G039100--Sobic004G290500 Sobic007G110800 Sobic007G110800 Sobic006G170500--Sobic007G110800 Sobic006G224400 Sobic006G224400 Sobic006G170500--Sobic006G224400 Sobic004G086900 Sobic004G086900 Sobic006G170500--Sobic004G086900 Sobic007G082300 Sobic007G082300 Sobic006G170500--Sobic007G082300 Sobic005G087732 Sobic005G087732 Sobic006G170500--Sobic005G087732 Sobic007G167950 Sobic007G167950 Sobic006G170500--Sobic007G167950 Sobic001G364300 Sobic001G364300 Sobic006G170500--Sobic001G364300 Sobic008G177001 Sobic008G177001 Sobic006G170500--Sobic008G177001 Sobic005G058200 Sobic005G058200 Sobic006G170500--Sobic005G058200 Sobic007G204200--Sobic005G037700 Sobic007G204200--Sobic004G192600 Sobic008G074100 Sobic008G074100 Sobic007G204200--Sobic008G074100 Sobic007G204200--Sobic001G089400 Sobic007G204200--Sobic003G004000 Sobic007G204200--Sobic007G197000 Sobic003G420500 Sobic003G420500 Sobic007G204200--Sobic003G420500 Sobic007G204200--Sobic010G121700 Sobic007G204200--Sobic003G070400 Sobic007G081100--Sobic002G204500 Sobic007G081100--Sobic007G082100 Sobic007G081100--Sobic003G191200 Sobic007G081100--Sobic003G070400 Sobic007G081100--Sobic007G031200 Sobic007G081100--Sobic004G100300 Sobic009G060100 Sobic009G060100 Sobic007G081100--Sobic009G060100 Sobic002G182701 Sobic002G182701 Sobic007G081100--Sobic002G182701 Sobic001G211700 Sobic001G211700 Sobic007G081100--Sobic001G211700
Octagon: transcription factors


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