Gene annotation
Transcriptome id Sobic.001G112600.1
Synonym ACT11, CYP71E1, Actin1;cytochrome p 71E1, Sb01g010030
Functional annotation Actin (PubMedID : 27325899)
protein and mRNA level correlates with dhurrin amount (PubMedID : 12114576)
actin, putative, expressed
UniProt A0A1B6QIF9 , P53504
Pfam PF00022
Panther DB PTHR11937 PTHR11937:SF210
NCBI CDD -
KEGG Orthology K10355; actin, other eukaryote
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12110 : actin-11
RAP-DB (Rice) LOC_Os03g50885.1 : actin, putative, expressed
MaizeGDB (Corn) Zm00025a017441 , Zm00025a052678 , Zm00025a016937 , Zm00025a007893 , Zm00025a011910 , Zm00025a026721 , Zm00025a037260
Brachypodium PNT73248 , KQK13511 , KQJ85561 , KQK10759
Barley HORVU3Hr1G083380.3 , HORVU3Hr1G083380.2 , HORVU3Hr1G083380.1 , HORVU3Hr1G083380.6 , HORVU3Hr1G083380.5 , HORVU3Hr1G083380.4 , HORVU4Hr1G008310.6 , HORVU4Hr1G008310.8 , HORVU4Hr1G008310.9 , HORVU5Hr1G039850.8 , HORVU4Hr1G008310.7 , HORVU4Hr1G008310.4 , HORVU4Hr1G008310.5 , HORVU4Hr1G008310.2 , HORVU4Hr1G008310.3 , HORVU4Hr1G008310.1 , HORVU5Hr1G039850.1 , HORVU5Hr1G039850.2 , HORVU5Hr1G039850.3 , HORVU5Hr1G039850.4 , HORVU5Hr1G039850.5 , HORVU5Hr1G039850.6 , HORVU5Hr1G039850.7 , HORVU5Hr1G000180.4 , HORVU5Hr1G000180.2 , HORVU5Hr1G000180.3 , HORVU5Hr1G000180.1
Wheat TraesCS5B02G124100 , TraesCS3B02G410000 , TraesCS3B02G410000 , TraesCS5A02G000400 , TraesCS3A02G377300 , TraesCS4B02G050600 , TraesCS4B02G050600 , TraesCS4B02G050600 , TraesCS4A02G356100 , TraesCS4A02G356100 , TraesCS5D02G000400 , TraesCS4D02G050800 , TraesCS5D02G516200 , TraesCS4D02G050800 , TraesCS4A02G264400 , TraesCS4A02G264400 , TraesCS4A02G264400 , TraesCS5A02G124300 , TraesCS5A02G124300 , TraesCS1D02G274400 , TraesCS5B02G516100
Populus PNS97854 , PNT57597 , PNT57598 , PNT57599 , PNT57600 , PNT57601 , PNT57602 , PNS97853 , PNT32494 , PNT32495


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cDNA sequences
Sobic.001G112600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G050400 syntaxin 6, putative, expressed -
2 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
3 Sobic.003G441000 rhoGAP domain containing protein, expressed -
4 Sobic.002G170100 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
5 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase
6 Sobic.003G244400 OsFBK1 - F-box domain and kelch repeat containing protein, expressed -
7 Sobic.008G055200 dirigent, putative, expressed -
8 Sobic.004G358000 CAMK_CAMK_like.16 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
9 Sobic.005G144000 glycosyltransferase, putative, expressed -
10 Sobic.006G115700 WRKY35, expressed K18835: WRKY transcription factor 2
11 Sobic.001G194800 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
12 Sobic.001G432200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
13 Sobic.002G364700 ZOS7-11 - C2H2 zinc finger protein, expressed -
14 Sobic.006G204500 pectinacetylesterase domain containing protein, expressed -
15 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
16 Sobic.001G370400 aberrant pollen transmission 1, putative, expressed -
17 Sobic.002G381500 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
18 Sobic.002G404600 expressed protein -
19 Sobic.001G279000 OsFBX382 - F-box domain containing protein, expressed -
20 Sobic.003G290500 profilin domain containing protein, expressed K05759: profilin


Gene co-expression network
sample Sobic001G112600 Sobic001G112600 Sobic005G050400 Sobic005G050400 Sobic001G112600--Sobic005G050400 Sobic009G242200 Sobic009G242200 Sobic001G112600--Sobic009G242200 Sobic003G441000 Sobic003G441000 Sobic001G112600--Sobic003G441000 Sobic002G170100 Sobic002G170100 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic003G244400 Sobic003G244400 Sobic001G112600--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic001G112600--Sobic008G055200 Sobic004G358000 Sobic004G358000 Sobic001G112600--Sobic004G358000 Sobic005G144000 Sobic005G144000 Sobic001G112600--Sobic005G144000 Sobic005G050400--Sobic001G112600 Sobic001G072000 Sobic001G072000 Sobic005G050400--Sobic001G072000 Sobic008G156600 Sobic008G156600 Sobic005G050400--Sobic008G156600 Sobic005G050400--Sobic009G242200 Sobic005G050400--Sobic002G170100 Sobic005G050400--Sobic003G441000 Sobic004G007400 Sobic004G007400 Sobic005G050400--Sobic004G007400 Sobic005G050400--Sobic005G144000 Sobic009G163100 Sobic009G163100 Sobic005G050400--Sobic009G163100 Sobic009G242200--Sobic002G170100 Sobic003G290500 Sobic003G290500 Sobic009G242200--Sobic003G290500 Sobic002G380300 Sobic002G380300 Sobic009G242200--Sobic002G380300 Sobic006G115700 Sobic006G115700 Sobic009G242200--Sobic006G115700 Sobic003G304600 Sobic003G304600 Sobic009G242200--Sobic003G304600 Sobic009G242200--Sobic004G358000 Sobic007G091400 Sobic007G091400 Sobic009G242200--Sobic007G091400 Sobic003G297100 Sobic003G297100 Sobic009G242200--Sobic003G297100 Sobic001G370400 Sobic001G370400 Sobic009G242200--Sobic001G370400 Sobic003G441000--Sobic005G144000 Sobic003G441000--Sobic001G112600 Sobic003G441000--Sobic002G170100 Sobic003G441000--Sobic009G242200 Sobic001G279000 Sobic001G279000 Sobic003G441000--Sobic001G279000 Sobic003G441000--Sobic004G358000 Sobic003G441000--Sobic003G290500 Sobic003G441000--Sobic008G055200 Sobic005G170400 Sobic005G170400 Sobic003G441000--Sobic005G170400 Sobic002G170100--Sobic009G242200 Sobic002G170100--Sobic002G380300 Sobic002G170100--Sobic005G170400 Sobic002G170100--Sobic004G358000 Sobic003G218100 Sobic003G218100 Sobic002G170100--Sobic003G218100 Sobic002G170100--Sobic003G290500 Sobic002G170100--Sobic003G304600 Sobic002G170100--Sobic005G144000 Sobic002G283200 Sobic002G283200 Sobic002G170100--Sobic002G283200 Sobic001G357400 Sobic001G357400 Sobic001G414650--Sobic001G357400 Sobic002G404600 Sobic002G404600 Sobic001G414650--Sobic002G404600 Sobic001G414650--Sobic008G055200 Sobic002G381500 Sobic002G381500 Sobic001G414650--Sobic002G381500 Sobic007G070900 Sobic007G070900 Sobic001G414650--Sobic007G070900 Sobic006G105100 Sobic006G105100 Sobic001G414650--Sobic006G105100 Sobic004G054900 Sobic004G054900 Sobic001G414650--Sobic004G054900 Sobic009G110600 Sobic009G110600 Sobic001G414650--Sobic009G110600 Sobic001G337100 Sobic001G337100 Sobic001G414650--Sobic001G337100 Sobic003G244400--Sobic001G370400 Sobic001G103100 Sobic001G103100 Sobic003G244400--Sobic001G103100 Sobic003G244400--Sobic008G055200 Sobic001G432200 Sobic001G432200 Sobic003G244400--Sobic001G432200 Sobic006G204500 Sobic006G204500 Sobic003G244400--Sobic006G204500 Sobic001G340800 Sobic001G340800 Sobic003G244400--Sobic001G340800 Sobic002G364700 Sobic002G364700 Sobic003G244400--Sobic002G364700 Sobic003G244400--Sobic007G091400 Sobic010G003200 Sobic010G003200 Sobic003G244400--Sobic010G003200 Sobic005G176700 Sobic005G176700 Sobic008G055200--Sobic005G176700 Sobic005G148000 Sobic005G148000 Sobic008G055200--Sobic005G148000 Sobic005G040100 Sobic005G040100 Sobic008G055200--Sobic005G040100 Sobic001G192300 Sobic001G192300 Sobic008G055200--Sobic001G192300 Sobic004G094400 Sobic004G094400 Sobic008G055200--Sobic004G094400 Sobic001G143700 Sobic001G143700 Sobic008G055200--Sobic001G143700 Sobic002G006200 Sobic002G006200 Sobic008G055200--Sobic002G006200 Sobic002G097300 Sobic002G097300 Sobic008G055200--Sobic002G097300 Sobic008G138400 Sobic008G138400 Sobic008G055200--Sobic008G138400 Sobic004G358000--Sobic002G170100 Sobic004G358000--Sobic007G091400 Sobic004G358000--Sobic001G103100 Sobic004G358000--Sobic009G242200 Sobic004G358000--Sobic003G290500 Sobic004G358000--Sobic003G218100 Sobic004G358000--Sobic003G304600 Sobic004G358000--Sobic002G380300 Sobic008G176500 Sobic008G176500 Sobic004G358000--Sobic008G176500 Sobic005G144000--Sobic003G441000 Sobic005G144000--Sobic002G170100 Sobic008G122800 Sobic008G122800 Sobic005G144000--Sobic008G122800 Sobic005G144000--Sobic001G279000 Sobic005G144000--Sobic009G242200 Sobic001G503600 Sobic001G503600 Sobic005G144000--Sobic001G503600 Sobic004G180100 Sobic004G180100 Sobic005G144000--Sobic004G180100 Sobic008G071300 Sobic008G071300 Sobic005G144000--Sobic008G071300 Sobic005G144000--Sobic002G404600
Octagon: transcription factors


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