Gene annotation
Transcriptome id Sobic.001G370400.2,Sobic.001G370400.1
Synonym Sb01g035230, SAB
Functional annotation aberrant pollen transmission 1, putative, expressed
UniProt A0A1Z5S9K5 , C5WZR3
Pfam PF10351
Panther DB PTHR15678 PTHR15678:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G58250 : Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain
RAP-DB (Rice) LOC_Os03g23030.1 : aberrant pollen transmission 1, putative, expressed
MaizeGDB (Corn) Zm00025a052358
Brachypodium KQK21667
Barley HORVU4Hr1G034650.18 , HORVU4Hr1G034650.19 , HORVU4Hr1G034650.16 , HORVU4Hr1G034650.17 , HORVU4Hr1G034650.14 , HORVU4Hr1G034650.15 , HORVU4Hr1G034650.12 , HORVU4Hr1G034650.13 , HORVU4Hr1G034650.10 , HORVU4Hr1G034650.11 , HORVU4Hr1G034650.8 , HORVU4Hr1G034650.9 , HORVU4Hr1G034650.4 , HORVU4Hr1G034650.5 , HORVU4Hr1G034650.6 , HORVU4Hr1G034650.7 , HORVU4Hr1G034650.1 , HORVU4Hr1G034650.2 , HORVU4Hr1G034650.3 , HORVU4Hr1G034650.23 , HORVU4Hr1G034650.22 , HORVU4Hr1G034650.21 , HORVU4Hr1G034650.20
Wheat TraesCS4B02G164900 , TraesCS4B02G164900 , TraesCS4D02G162100 , TraesCS4D02G162100 , TraesCS4D02G166500 , TraesCS4A02G147900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G061601 - -
2 Sobic.003G297100 expressed protein -
3 Sobic.001G063300 CAMK_CAMK_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
4 Sobic.006G205400 villin protein, putative, expressed -
5 Sobic.007G131000 dynamin-2B, putative, expressed K01528: dynamin 1/3
6 Sobic.003G151400 protein kinase, putative, expressed K13436: pto-interacting protein 1
7 Sobic.007G215200 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
8 Sobic.002G015900 OsFBLD4 - F-box, LRR and FBD domain containing protein, expressed -
9 Sobic.001G294500 phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed K01626: E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
10 Sobic.004G094400 - -
11 Sobic.008G020800 GASR10 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
12 Sobic.001G212500 vacuolar protein sorting-associated protein 52, putative, expressed -
13 Sobic.008G176500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AGC_AGC_other_GWLd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
14 Sobic.001G337100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17795: mitochondrial import inner membrane translocase subunit TIM17
15 Sobic.003G304600 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
16 Sobic.003G093100 cyclin-related protein, putative, expressed -
17 Sobic.010G016200 expressed protein -
18 Sobic.001G261416 - K01858: INO1, myo-inositol-1-phosphate synthase
19 Sobic.005G176700 methyltransferase, putative, expressed -
20 Sobic.010G207800 E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase


Gene co-expression network
sample Sobic001G370400 Sobic001G370400 Sobic009G061601 Sobic009G061601 Sobic001G370400--Sobic009G061601 Sobic003G297100 Sobic003G297100 Sobic001G370400--Sobic003G297100 Sobic001G063300 Sobic001G063300 Sobic001G370400--Sobic001G063300 Sobic006G205400 Sobic006G205400 Sobic001G370400--Sobic006G205400 Sobic007G131000 Sobic007G131000 Sobic001G370400--Sobic007G131000 Sobic003G151400 Sobic003G151400 Sobic001G370400--Sobic003G151400 Sobic007G215200 Sobic007G215200 Sobic001G370400--Sobic007G215200 Sobic002G015900 Sobic002G015900 Sobic001G370400--Sobic002G015900 Sobic001G294500 Sobic001G294500 Sobic001G370400--Sobic001G294500 Sobic009G061601--Sobic007G131000 Sobic009G061601--Sobic007G215200 Sobic009G061601--Sobic001G294500 Sobic009G061601--Sobic003G151400 Sobic009G061601--Sobic006G205400 Sobic005G204600 Sobic005G204600 Sobic009G061601--Sobic005G204600 Sobic009G061601--Sobic001G063300 Sobic010G207800 Sobic010G207800 Sobic009G061601--Sobic010G207800 Sobic001G261416 Sobic001G261416 Sobic009G061601--Sobic001G261416 Sobic003G297100--Sobic007G131000 Sobic003G297100--Sobic009G061601 Sobic001G093100 Sobic001G093100 Sobic003G297100--Sobic001G093100 Sobic007G142801 Sobic007G142801 Sobic003G297100--Sobic007G142801 Sobic003G164400 Sobic003G164400 Sobic003G297100--Sobic003G164400 Sobic003G297100--Sobic007G215200 Sobic003G304600 Sobic003G304600 Sobic003G297100--Sobic003G304600 Sobic003G297100--Sobic006G205400 Sobic005G026700 Sobic005G026700 Sobic003G297100--Sobic005G026700 Sobic001G063300--Sobic001G261416 Sobic010G090200 Sobic010G090200 Sobic001G063300--Sobic010G090200 Sobic001G063300--Sobic010G207800 Sobic010G216100 Sobic010G216100 Sobic001G063300--Sobic010G216100 Sobic007G014000 Sobic007G014000 Sobic001G063300--Sobic007G014000 Sobic010G240300 Sobic010G240300 Sobic001G063300--Sobic010G240300 Sobic001G063300--Sobic007G215200 Sobic001G287400 Sobic001G287400 Sobic001G063300--Sobic001G287400 Sobic005G006100 Sobic005G006100 Sobic001G063300--Sobic005G006100 Sobic001G212500 Sobic001G212500 Sobic006G205400--Sobic001G212500 Sobic008G043200 Sobic008G043200 Sobic006G205400--Sobic008G043200 Sobic002G254700 Sobic002G254700 Sobic006G205400--Sobic002G254700 Sobic009G175400 Sobic009G175400 Sobic006G205400--Sobic009G175400 Sobic006G205400--Sobic001G063300 Sobic001G332000 Sobic001G332000 Sobic006G205400--Sobic001G332000 Sobic010G276100 Sobic010G276100 Sobic006G205400--Sobic010G276100 Sobic006G205400--Sobic007G215200 Sobic010G040400 Sobic010G040400 Sobic006G205400--Sobic010G040400 Sobic003G246500 Sobic003G246500 Sobic007G131000--Sobic003G246500 Sobic005G040700 Sobic005G040700 Sobic007G131000--Sobic005G040700 Sobic004G100900 Sobic004G100900 Sobic007G131000--Sobic004G100900 Sobic003G175950 Sobic003G175950 Sobic007G131000--Sobic003G175950 Sobic010G051000 Sobic010G051000 Sobic007G131000--Sobic010G051000 Sobic007G131000--Sobic001G332000 Sobic001G329200 Sobic001G329200 Sobic007G131000--Sobic001G329200 Sobic001G269100 Sobic001G269100 Sobic007G131000--Sobic001G269100 Sobic001G171300 Sobic001G171300 Sobic007G131000--Sobic001G171300 Sobic003G151400--Sobic001G294500 Sobic001G109900 Sobic001G109900 Sobic003G151400--Sobic001G109900 Sobic003G151400--Sobic007G131000 Sobic003G093100 Sobic003G093100 Sobic003G151400--Sobic003G093100 Sobic003G151400--Sobic009G061601 Sobic008G025400 Sobic008G025400 Sobic003G151400--Sobic008G025400 Sobic003G151400--Sobic006G205400 Sobic005G092100 Sobic005G092100 Sobic003G151400--Sobic005G092100 Sobic003G151400--Sobic002G254700 Sobic007G215200--Sobic010G207800 Sobic007G215200--Sobic001G261416 Sobic007G215200--Sobic001G332000 Sobic007G215200--Sobic010G090200 Sobic007G215200--Sobic001G329200 Sobic007G215200--Sobic001G287400 Sobic007G215200--Sobic007G014000 Sobic007G215200--Sobic001G171300 Sobic007G215200--Sobic010G216100 Sobic009G250300 Sobic009G250300 Sobic002G015900--Sobic009G250300 Sobic001G337100 Sobic001G337100 Sobic002G015900--Sobic001G337100 Sobic002G015900--Sobic001G063300 Sobic008G086500 Sobic008G086500 Sobic002G015900--Sobic008G086500 Sobic005G006400 Sobic005G006400 Sobic002G015900--Sobic005G006400 Sobic002G194201 Sobic002G194201 Sobic002G015900--Sobic002G194201 Sobic003G007650 Sobic003G007650 Sobic002G015900--Sobic003G007650 Sobic007G035200 Sobic007G035200 Sobic002G015900--Sobic007G035200 Sobic007G134501 Sobic007G134501 Sobic002G015900--Sobic007G134501 Sobic001G294500--Sobic007G131000 Sobic004G177900 Sobic004G177900 Sobic001G294500--Sobic004G177900 Sobic001G294500--Sobic003G151400 Sobic005G043300 Sobic005G043300 Sobic001G294500--Sobic005G043300 Sobic001G294500--Sobic003G246500 Sobic001G294500--Sobic008G025400 Sobic001G294500--Sobic003G093100 Sobic001G294500--Sobic005G204600 Sobic001G294500--Sobic009G061601
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.