Gene annotation
Transcriptome id Sobic.006G205400.1
Synonym VLN4, ATVLN4, Sb06g027650
Functional annotation villin protein, putative, expressed
UniProt C5YFG9
Pfam PF02209 PF00626
Panther DB PTHR11977 PTHR11977:SF49
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007010; cytoskeleton organization GO:0003779actin binding


Orthologs (automatic annotation)
TAIR AT4G30160 : villin 4
RAP-DB (Rice) LOC_Os04g51440.2 : villin protein, putative, expressed
MaizeGDB (Corn) Zm00025a009914 , Zm00025a056954
Brachypodium KQJ84416 , KQJ95724 , KQJ95723
Barley HORVU2Hr1G101190.8 , HORVU2Hr1G101190.9 , HORVU2Hr1G101190.6 , HORVU2Hr1G101190.7 , HORVU2Hr1G101190.4 , HORVU2Hr1G101190.5 , HORVU2Hr1G101190.2 , HORVU2Hr1G101190.3 , HORVU2Hr1G101190.1 , HORVU2Hr1G101190.10 , HORVU2Hr1G101190.11 , HORVU2Hr1G101190.12 , HORVU2Hr1G101190.13
Wheat TraesCS2B02G455700 , TraesCS2B02G455700 , TraesCS2A02G434600 , TraesCS2A02G434600 , TraesCS2D02G432400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G212500 vacuolar protein sorting-associated protein 52, putative, expressed -
2 Sobic.008G043200 - -
3 Sobic.002G254700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
4 Sobic.009G175400 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
5 Sobic.001G063300 CAMK_CAMK_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
6 Sobic.001G332000 pollen allergen, putative, expressed -
7 Sobic.010G276100 transporter family protein, putative, expressed -
8 Sobic.007G215200 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
9 Sobic.010G040400 polygalacturonase, putative, expressed -
10 Sobic.005G040700 amino acid permease family protein, putative, expressed -
11 Sobic.010G144700 plant protein of unknown function domain containing protein, expressed -
12 Sobic.005G145400 RNA recognition motif containing protein, putative, expressed -
13 Sobic.001G130500 - -
14 Sobic.001G329200 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
15 Sobic.007G131000 dynamin-2B, putative, expressed K01528: dynamin 1/3
16 Sobic.010G051000 "domain confirmed by Pfam database, expressed in flower, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
17 Sobic.010G207800 E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
18 Sobic.003G175950 - -
19 Sobic.009G082900 POEI21 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
20 Sobic.010G016200 expressed protein -


Gene co-expression network
sample Sobic006G205400 Sobic006G205400 Sobic001G212500 Sobic001G212500 Sobic006G205400--Sobic001G212500 Sobic008G043200 Sobic008G043200 Sobic006G205400--Sobic008G043200 Sobic002G254700 Sobic002G254700 Sobic006G205400--Sobic002G254700 Sobic009G175400 Sobic009G175400 Sobic006G205400--Sobic009G175400 Sobic001G063300 Sobic001G063300 Sobic006G205400--Sobic001G063300 Sobic001G332000 Sobic001G332000 Sobic006G205400--Sobic001G332000 Sobic010G276100 Sobic010G276100 Sobic006G205400--Sobic010G276100 Sobic007G215200 Sobic007G215200 Sobic006G205400--Sobic007G215200 Sobic010G040400 Sobic010G040400 Sobic006G205400--Sobic010G040400 Sobic004G100900 Sobic004G100900 Sobic001G212500--Sobic004G100900 Sobic005G040700 Sobic005G040700 Sobic001G212500--Sobic005G040700 Sobic003G175950 Sobic003G175950 Sobic001G212500--Sobic003G175950 Sobic001G329200 Sobic001G329200 Sobic001G212500--Sobic001G329200 Sobic001G212500--Sobic001G332000 Sobic001G269100 Sobic001G269100 Sobic001G212500--Sobic001G269100 Sobic010G051000 Sobic010G051000 Sobic001G212500--Sobic010G051000 Sobic001G130500 Sobic001G130500 Sobic001G212500--Sobic001G130500 Sobic001G287400 Sobic001G287400 Sobic001G212500--Sobic001G287400 Sobic010G016200 Sobic010G016200 Sobic008G043200--Sobic010G016200 Sobic005G145400 Sobic005G145400 Sobic008G043200--Sobic005G145400 Sobic008G043200--Sobic009G175400 Sobic001G089400 Sobic001G089400 Sobic008G043200--Sobic001G089400 Sobic008G043200--Sobic010G040400 Sobic008G043200--Sobic007G215200 Sobic001G092500 Sobic001G092500 Sobic008G043200--Sobic001G092500 Sobic010G207800 Sobic010G207800 Sobic008G043200--Sobic010G207800 Sobic008G043200--Sobic001G332000 Sobic002G254700--Sobic009G175400 Sobic009G082900 Sobic009G082900 Sobic002G254700--Sobic009G082900 Sobic002G254700--Sobic010G276100 Sobic010G144700 Sobic010G144700 Sobic002G254700--Sobic010G144700 Sobic001G252900 Sobic001G252900 Sobic002G254700--Sobic001G252900 Sobic004G002800 Sobic004G002800 Sobic002G254700--Sobic004G002800 Sobic003G073540 Sobic003G073540 Sobic002G254700--Sobic003G073540 Sobic010G252600 Sobic010G252600 Sobic002G254700--Sobic010G252600 Sobic001G528700 Sobic001G528700 Sobic002G254700--Sobic001G528700 Sobic009G175400--Sobic010G276100 Sobic009G175400--Sobic010G144700 Sobic009G175400--Sobic010G040400 Sobic009G175400--Sobic009G082900 Sobic009G175400--Sobic001G332000 Sobic009G175400--Sobic008G043200 Sobic009G175400--Sobic005G040700 Sobic001G288400 Sobic001G288400 Sobic009G175400--Sobic001G288400 Sobic009G175400--Sobic005G145400 Sobic001G261416 Sobic001G261416 Sobic001G063300--Sobic001G261416 Sobic010G090200 Sobic010G090200 Sobic001G063300--Sobic010G090200 Sobic001G063300--Sobic010G207800 Sobic010G216100 Sobic010G216100 Sobic001G063300--Sobic010G216100 Sobic007G014000 Sobic007G014000 Sobic001G063300--Sobic007G014000 Sobic010G240300 Sobic010G240300 Sobic001G063300--Sobic010G240300 Sobic001G063300--Sobic007G215200 Sobic001G063300--Sobic001G287400 Sobic005G006100 Sobic005G006100 Sobic001G063300--Sobic005G006100 Sobic001G332000--Sobic001G329200 Sobic001G332000--Sobic001G130500 Sobic001G332000--Sobic003G175950 Sobic001G332000--Sobic005G040700 Sobic001G332000--Sobic001G287400 Sobic001G171300 Sobic001G171300 Sobic001G332000--Sobic001G171300 Sobic001G332000--Sobic010G051000 Sobic001G332000--Sobic001G269100 Sobic001G332000--Sobic001G261416 Sobic010G276100--Sobic009G175400 Sobic010G276100--Sobic010G040400 Sobic010G276100--Sobic010G144700 Sobic010G276100--Sobic009G082900 Sobic010G276100--Sobic001G092500 Sobic006G259100 Sobic006G259100 Sobic010G276100--Sobic006G259100 Sobic010G276100--Sobic005G145400 Sobic010G276100--Sobic004G002800 Sobic010G276100--Sobic001G252900 Sobic007G215200--Sobic010G207800 Sobic007G215200--Sobic001G261416 Sobic007G215200--Sobic001G332000 Sobic007G215200--Sobic010G090200 Sobic007G215200--Sobic001G329200 Sobic007G215200--Sobic001G287400 Sobic007G215200--Sobic007G014000 Sobic007G215200--Sobic001G171300 Sobic007G215200--Sobic010G216100 Sobic010G040400--Sobic009G175400 Sobic010G040400--Sobic010G276100 Sobic010G040400--Sobic010G144700 Sobic010G040400--Sobic001G332000 Sobic010G040400--Sobic005G040700 Sobic010G040400--Sobic001G092500 Sobic010G040400--Sobic009G082900 Sobic010G040400--Sobic010G051000 Sobic010G040400--Sobic001G288400
Octagon: transcription factors


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