Gene annotation
Transcriptome id Sobic.001G432200.1,Sobic.001G432200.2
Synonym Sb01g040660
Functional annotation pleckstrin homology domain-containing protein-related taxo, putative, expressed
UniProt A0A1B6QPA1 , A0A1Z5SAD9
Pfam PF00169 PF14389 PF00620
Panther DB PTHR23176 PTHR23176:SF38
NCBI CDD KOG4271; Rho-GTPase activating protein
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction


Orthologs (automatic annotation)
TAIR AT5G19390 : Rho GTPase activation protein (RhoGAP) with PH domain
RAP-DB (Rice) LOC_Os03g11140.2 : pleckstrin homology domain-containing protein-related taxo, putative, expressed
MaizeGDB (Corn) Zm00025a050322 , Zm00025a052841 , Zm00025a041162 , Zm00025a001654 , Zm00025a052835
Brachypodium KQK22506
Barley HORVU4Hr1G062120.5 , HORVU4Hr1G062120.4 , HORVU4Hr1G062120.7 , HORVU4Hr1G062120.6 , HORVU4Hr1G062120.1 , HORVU4Hr1G062120.3 , HORVU4Hr1G062120.2 , HORVU4Hr1G062120.9 , HORVU4Hr1G062120.8 , HORVU4Hr1G062120.11 , HORVU4Hr1G062120.10 , HORVU4Hr1G062120.13 , HORVU4Hr1G062120.12 , HORVU4Hr1G062120.14 , HORVU4Hr1G062120.17 , HORVU4Hr1G062120.16 , HORVU4Hr1G062120.19 , HORVU4Hr1G062120.18 , HORVU4Hr1G062120.31 , HORVU4Hr1G062120.30 , HORVU4Hr1G062120.28 , HORVU4Hr1G062120.29 , HORVU4Hr1G062120.24 , HORVU4Hr1G062120.25 , HORVU4Hr1G062120.26 , HORVU4Hr1G062120.27 , HORVU4Hr1G062120.20 , HORVU4Hr1G062120.21 , HORVU4Hr1G062120.22 , HORVU4Hr1G062120.23
Wheat TraesCS4B02G219700 , TraesCS4D02G220100 , TraesCS4A02G084500 , TraesCS4A02G084500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G093100 cyclin-related protein, putative, expressed -
2 Sobic.001G370400 aberrant pollen transmission 1, putative, expressed -
3 Sobic.003G297100 expressed protein -
4 Sobic.009G061601 - -
5 Sobic.003G151400 protein kinase, putative, expressed K13436: pto-interacting protein 1
6 Sobic.002G088600 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
7 Sobic.004G290600 beige/BEACH domain containing protein, expressed -
8 Sobic.006G204500 pectinacetylesterase domain containing protein, expressed -
9 Sobic.001G294500 phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed K01626: E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
10 Sobic.006G115700 WRKY35, expressed K18835: WRKY transcription factor 2
11 Sobic.010G003200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
12 Sobic.007G142801 - -
13 Sobic.007G131000 dynamin-2B, putative, expressed K01528: dynamin 1/3
14 Sobic.004G177900 - -
15 Sobic.008G020800 GASR10 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
16 Sobic.002G364700 ZOS7-11 - C2H2 zinc finger protein, expressed -
17 Sobic.007G016700 OsFBX142 - F-box domain containing protein, expressed -
18 Sobic.008G025400 ankyrin, putative, expressed -
19 Sobic.001G340800 exocyst complex component 6, putative, expressed -
20 Sobic.005G176700 methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic001G432200 Sobic001G432200 Sobic003G093100 Sobic003G093100 Sobic001G432200--Sobic003G093100 Sobic001G370400 Sobic001G370400 Sobic001G432200--Sobic001G370400 Sobic003G297100 Sobic003G297100 Sobic001G432200--Sobic003G297100 Sobic009G061601 Sobic009G061601 Sobic001G432200--Sobic009G061601 Sobic003G151400 Sobic003G151400 Sobic001G432200--Sobic003G151400 Sobic002G088600 Sobic002G088600 Sobic001G432200--Sobic002G088600 Sobic004G290600 Sobic004G290600 Sobic001G432200--Sobic004G290600 Sobic006G204500 Sobic006G204500 Sobic001G432200--Sobic006G204500 Sobic001G294500 Sobic001G294500 Sobic001G432200--Sobic001G294500 Sobic008G025400 Sobic008G025400 Sobic003G093100--Sobic008G025400 Sobic003G093100--Sobic001G294500 Sobic003G093100--Sobic003G151400 Sobic003G093100--Sobic002G088600 Sobic004G177900 Sobic004G177900 Sobic003G093100--Sobic004G177900 Sobic007G131000 Sobic007G131000 Sobic003G093100--Sobic007G131000 Sobic003G246500 Sobic003G246500 Sobic003G093100--Sobic003G246500 Sobic003G164400 Sobic003G164400 Sobic003G093100--Sobic003G164400 Sobic003G093100--Sobic009G061601 Sobic001G370400--Sobic009G061601 Sobic001G370400--Sobic003G297100 Sobic001G063300 Sobic001G063300 Sobic001G370400--Sobic001G063300 Sobic006G205400 Sobic006G205400 Sobic001G370400--Sobic006G205400 Sobic001G370400--Sobic007G131000 Sobic001G370400--Sobic003G151400 Sobic007G215200 Sobic007G215200 Sobic001G370400--Sobic007G215200 Sobic002G015900 Sobic002G015900 Sobic001G370400--Sobic002G015900 Sobic001G370400--Sobic001G294500 Sobic003G297100--Sobic007G131000 Sobic003G297100--Sobic009G061601 Sobic001G093100 Sobic001G093100 Sobic003G297100--Sobic001G093100 Sobic007G142801 Sobic007G142801 Sobic003G297100--Sobic007G142801 Sobic003G297100--Sobic003G164400 Sobic003G297100--Sobic007G215200 Sobic003G304600 Sobic003G304600 Sobic003G297100--Sobic003G304600 Sobic003G297100--Sobic006G205400 Sobic005G026700 Sobic005G026700 Sobic003G297100--Sobic005G026700 Sobic009G061601--Sobic007G131000 Sobic009G061601--Sobic007G215200 Sobic009G061601--Sobic001G294500 Sobic009G061601--Sobic003G151400 Sobic009G061601--Sobic006G205400 Sobic005G204600 Sobic005G204600 Sobic009G061601--Sobic005G204600 Sobic009G061601--Sobic001G063300 Sobic010G207800 Sobic010G207800 Sobic009G061601--Sobic010G207800 Sobic001G261416 Sobic001G261416 Sobic009G061601--Sobic001G261416 Sobic003G151400--Sobic001G294500 Sobic001G109900 Sobic001G109900 Sobic003G151400--Sobic001G109900 Sobic003G151400--Sobic007G131000 Sobic003G151400--Sobic003G093100 Sobic003G151400--Sobic009G061601 Sobic003G151400--Sobic008G025400 Sobic003G151400--Sobic006G205400 Sobic005G092100 Sobic005G092100 Sobic003G151400--Sobic005G092100 Sobic002G254700 Sobic002G254700 Sobic003G151400--Sobic002G254700 Sobic002G088600--Sobic004G177900 Sobic002G088600--Sobic003G093100 Sobic002G088600--Sobic001G294500 Sobic002G088600--Sobic008G025400 Sobic002G088600--Sobic003G151400 Sobic004G328500 Sobic004G328500 Sobic002G088600--Sobic004G328500 Sobic002G088600--Sobic007G131000 Sobic002G088600--Sobic009G061601 Sobic005G043300 Sobic005G043300 Sobic002G088600--Sobic005G043300 Sobic004G290600--Sobic001G294500 Sobic004G290600--Sobic009G061601 Sobic004G290600--Sobic006G205400 Sobic002G106600 Sobic002G106600 Sobic004G290600--Sobic002G106600 Sobic004G290600--Sobic003G093100 Sobic004G290600--Sobic007G131000 Sobic005G114201 Sobic005G114201 Sobic004G290600--Sobic005G114201 Sobic001G337100 Sobic001G337100 Sobic004G290600--Sobic001G337100 Sobic010G188500 Sobic010G188500 Sobic004G290600--Sobic010G188500 Sobic006G204500--Sobic009G061601 Sobic004G273600 Sobic004G273600 Sobic006G204500--Sobic004G273600 Sobic008G020800 Sobic008G020800 Sobic006G204500--Sobic008G020800 Sobic001G402900 Sobic001G402900 Sobic006G204500--Sobic001G402900 Sobic010G003200 Sobic010G003200 Sobic006G204500--Sobic010G003200 Sobic002G372000 Sobic002G372000 Sobic006G204500--Sobic002G372000 Sobic007G197000 Sobic007G197000 Sobic006G204500--Sobic007G197000 Sobic002G364700 Sobic002G364700 Sobic006G204500--Sobic002G364700 Sobic004G014200 Sobic004G014200 Sobic006G204500--Sobic004G014200 Sobic001G294500--Sobic007G131000 Sobic001G294500--Sobic004G177900 Sobic001G294500--Sobic003G151400 Sobic001G294500--Sobic005G043300 Sobic001G294500--Sobic003G246500 Sobic001G294500--Sobic008G025400 Sobic001G294500--Sobic003G093100 Sobic001G294500--Sobic005G204600 Sobic001G294500--Sobic009G061601
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.