Gene annotation
Transcriptome id Sobic.001G072000.1
Synonym Sb01g006490, SDH1-1
Functional annotation succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed
UniProt C5WZ45
Pfam PF02910 PF00890
Panther DB PTHR11632 PTHR11632:SF54
NCBI CDD -
KEGG Orthology K00234; SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT5G66760 : succinate dehydrogenase 1-1
RAP-DB (Rice) LOC_Os07g04240.1 : succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a016214 , Zm00025a044974
Brachypodium KQK20981 , KQK12956
Barley HORVU0Hr1G013850.1 , HORVU0Hr1G013850.3 , HORVU0Hr1G013850.2 , HORVU0Hr1G013850.4
Wheat TraesCS5A02G411200 , TraesCS5B02G414900 , TraesCS5D02G420100 , TraesCS5A02G077100 , TraesCS2B02G267100
Populus -


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cDNA sequences
Sobic.001G072000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G322400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
2 Sobic.005G050400 syntaxin 6, putative, expressed -
3 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
4 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
5 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
6 Sobic.001G432200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
7 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
8 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
9 Sobic.004G038500 cyclin-related protein, putative, expressed -
10 Sobic.005G020600 Mad3/BUB1 homology region 1 domain containing protein, expressed -
11 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase
12 Sobic.002G364700 ZOS7-11 - C2H2 zinc finger protein, expressed -
13 Sobic.006G171600 ZOS4-10 - C2H2 zinc finger protein, expressed -
14 Sobic.004G062200 expressed protein -
15 Sobic.003G244400 OsFBK1 - F-box domain and kelch repeat containing protein, expressed -
16 Sobic.003G005700 AGC_PVPK_like_kin82y.4 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
17 Sobic.001G370400 aberrant pollen transmission 1, putative, expressed -
18 Sobic.002G170100 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
19 Sobic.009G202000 GATA zinc finger domain containing protein, expressed -
20 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase


Gene co-expression network
sample Sobic001G072000 Sobic001G072000 Sobic001G322400 Sobic001G322400 Sobic001G072000--Sobic001G322400 Sobic005G050400 Sobic005G050400 Sobic001G072000--Sobic005G050400 Sobic001G112600 Sobic001G112600 Sobic001G072000--Sobic001G112600 Sobic004G279200 Sobic004G279200 Sobic001G072000--Sobic004G279200 Sobic008G156600 Sobic008G156600 Sobic001G072000--Sobic008G156600 Sobic001G432200 Sobic001G432200 Sobic001G072000--Sobic001G432200 Sobic009G163100 Sobic009G163100 Sobic001G072000--Sobic009G163100 Sobic009G242200 Sobic009G242200 Sobic001G072000--Sobic009G242200 Sobic004G038500 Sobic004G038500 Sobic001G072000--Sobic004G038500 Sobic001G322400--Sobic001G072000 Sobic010G073900 Sobic010G073900 Sobic001G322400--Sobic010G073900 Sobic001G322400--Sobic001G432200 Sobic008G166100 Sobic008G166100 Sobic001G322400--Sobic008G166100 Sobic001G322400--Sobic004G279200 Sobic007G048101 Sobic007G048101 Sobic001G322400--Sobic007G048101 Sobic009G202000 Sobic009G202000 Sobic001G322400--Sobic009G202000 Sobic009G238650 Sobic009G238650 Sobic001G322400--Sobic009G238650 Sobic003G407700 Sobic003G407700 Sobic001G322400--Sobic003G407700 Sobic005G050400--Sobic001G112600 Sobic005G050400--Sobic001G072000 Sobic005G050400--Sobic008G156600 Sobic005G050400--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic005G050400--Sobic002G170100 Sobic003G441000 Sobic003G441000 Sobic005G050400--Sobic003G441000 Sobic004G007400 Sobic004G007400 Sobic005G050400--Sobic004G007400 Sobic005G144000 Sobic005G144000 Sobic005G050400--Sobic005G144000 Sobic005G050400--Sobic009G163100 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic001G112600--Sobic003G441000 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic003G244400 Sobic003G244400 Sobic001G112600--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic001G112600--Sobic008G055200 Sobic004G358000 Sobic004G358000 Sobic001G112600--Sobic004G358000 Sobic001G112600--Sobic005G144000 Sobic004G279200--Sobic001G072000 Sobic006G070564 Sobic006G070564 Sobic004G279200--Sobic006G070564 Sobic004G279200--Sobic005G050400 Sobic004G279200--Sobic001G322400 Sobic004G279200--Sobic001G414650 Sobic004G062200 Sobic004G062200 Sobic004G279200--Sobic004G062200 Sobic006G267100 Sobic006G267100 Sobic004G279200--Sobic006G267100 Sobic006G171600 Sobic006G171600 Sobic004G279200--Sobic006G171600 Sobic004G279200--Sobic001G112600 Sobic008G156600--Sobic009G163100 Sobic008G156600--Sobic005G050400 Sobic008G156600--Sobic001G072000 Sobic008G156600--Sobic001G112600 Sobic005G020600 Sobic005G020600 Sobic008G156600--Sobic005G020600 Sobic008G171900 Sobic008G171900 Sobic008G156600--Sobic008G171900 Sobic004G241300 Sobic004G241300 Sobic008G156600--Sobic004G241300 Sobic008G156600--Sobic004G007400 Sobic008G156600--Sobic001G322400 Sobic003G093100 Sobic003G093100 Sobic001G432200--Sobic003G093100 Sobic001G370400 Sobic001G370400 Sobic001G432200--Sobic001G370400 Sobic003G297100 Sobic003G297100 Sobic001G432200--Sobic003G297100 Sobic009G061601 Sobic009G061601 Sobic001G432200--Sobic009G061601 Sobic003G151400 Sobic003G151400 Sobic001G432200--Sobic003G151400 Sobic002G088600 Sobic002G088600 Sobic001G432200--Sobic002G088600 Sobic004G290600 Sobic004G290600 Sobic001G432200--Sobic004G290600 Sobic006G204500 Sobic006G204500 Sobic001G432200--Sobic006G204500 Sobic001G294500 Sobic001G294500 Sobic001G432200--Sobic001G294500 Sobic009G163100--Sobic008G156600 Sobic009G163100--Sobic005G020600 Sobic009G163100--Sobic008G171900 Sobic009G163100--Sobic001G072000 Sobic002G299500 Sobic002G299500 Sobic009G163100--Sobic002G299500 Sobic009G163100--Sobic005G050400 Sobic001G435700 Sobic001G435700 Sobic009G163100--Sobic001G435700 Sobic009G163100--Sobic001G112600 Sobic009G163100--Sobic001G322400 Sobic009G242200--Sobic002G170100 Sobic003G290500 Sobic003G290500 Sobic009G242200--Sobic003G290500 Sobic002G380300 Sobic002G380300 Sobic009G242200--Sobic002G380300 Sobic006G115700 Sobic006G115700 Sobic009G242200--Sobic006G115700 Sobic003G304600 Sobic003G304600 Sobic009G242200--Sobic003G304600 Sobic009G242200--Sobic004G358000 Sobic007G091400 Sobic007G091400 Sobic009G242200--Sobic007G091400 Sobic009G242200--Sobic003G297100 Sobic009G242200--Sobic001G370400 Sobic004G038500--Sobic001G072000 Sobic004G038500--Sobic004G279200 Sobic001G230801 Sobic001G230801 Sobic004G038500--Sobic001G230801 Sobic004G038500--Sobic006G267100 Sobic004G074900 Sobic004G074900 Sobic004G038500--Sobic004G074900 Sobic004G038500--Sobic001G322400 Sobic003G005700 Sobic003G005700 Sobic004G038500--Sobic003G005700 Sobic004G038500--Sobic005G050400 Sobic004G038500--Sobic001G112600
Octagon: transcription factors


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