Gene annotation
Transcriptome id Sobic.004G038500.1
Synonym Sb04g003310
Functional annotation cyclin-related protein, putative, expressed
UniProt C5XUK8
Pfam -
Panther DB PTHR12444 PTHR12444:SF0
NCBI CDD KOG1877; Putative transmembrane protein cmp44E
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G41830 : Uncharacterized protein
RAP-DB (Rice) LOC_Os02g05040.1 : cyclin-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a018372 , Zm00025a041770 , Zm00025a018962
Brachypodium PNT75536 , PNT75537 , PNT75538 , PNT75539 , KQK17407 , PNT65864 , PNT65863 , PNT65862
Barley HORVU6Hr1G020790.20 , HORVU6Hr1G020790.25 , HORVU6Hr1G020790.24 , HORVU6Hr1G020790.19 , HORVU6Hr1G020790.14 , HORVU6Hr1G020790.18 , HORVU6Hr1G020790.16 , HORVU6Hr1G020790.17 , HORVU6Hr1G020790.10 , HORVU6Hr1G020790.11 , HORVU6Hr1G020790.12 , HORVU6Hr1G020790.13 , HORVU6Hr1G020790.21 , HORVU6Hr1G020790.27 , HORVU6Hr1G020790.26 , HORVU6Hr1G020790.29 , HORVU6Hr1G020790.28 , HORVU6Hr1G020790.15 , HORVU6Hr1G020790.34 , HORVU6Hr1G020790.35 , HORVU6Hr1G020790.32 , HORVU6Hr1G020790.33 , HORVU6Hr1G020790.30 , HORVU6Hr1G020790.31 , HORVU6Hr1G020790.23 , HORVU6Hr1G020790.22 , HORVU6Hr1G020790.6 , HORVU6Hr1G020790.7 , HORVU6Hr1G020790.4 , HORVU6Hr1G020790.5 , HORVU6Hr1G020790.2 , HORVU6Hr1G020790.3 , HORVU6Hr1G020790.1 , HORVU6Hr1G020790.8 , HORVU6Hr1G020790.9
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
2 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
3 Sobic.001G230801 - -
4 Sobic.006G267100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G074900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
6 Sobic.001G322400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
7 Sobic.003G005700 AGC_PVPK_like_kin82y.4 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
8 Sobic.005G050400 syntaxin 6, putative, expressed -
9 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
10 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase
11 Sobic.009G145000 early-responsive to dehydration protein-related, putative, expressed -
12 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
13 Sobic.001G279000 OsFBX382 - F-box domain containing protein, expressed -
14 Sobic.003G065100 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR1 - Auxin-responsive SAUR gene family member, expressed -
15 Sobic.002G362500 expressed protein -
16 Sobic.005G144000 glycosyltransferase, putative, expressed -
17 Sobic.002G170100 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
18 Sobic.003G349900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
19 Sobic.006G070564 - K01193: INV, beta-fructofuranosidase
20 Sobic.001G503600 expressed protein -


Gene co-expression network
sample Sobic004G038500 Sobic004G038500 Sobic001G072000 Sobic001G072000 Sobic004G038500--Sobic001G072000 Sobic004G279200 Sobic004G279200 Sobic004G038500--Sobic004G279200 Sobic001G230801 Sobic001G230801 Sobic004G038500--Sobic001G230801 Sobic006G267100 Sobic006G267100 Sobic004G038500--Sobic006G267100 Sobic004G074900 Sobic004G074900 Sobic004G038500--Sobic004G074900 Sobic001G322400 Sobic001G322400 Sobic004G038500--Sobic001G322400 Sobic003G005700 Sobic003G005700 Sobic004G038500--Sobic003G005700 Sobic005G050400 Sobic005G050400 Sobic004G038500--Sobic005G050400 Sobic001G112600 Sobic001G112600 Sobic004G038500--Sobic001G112600 Sobic001G072000--Sobic001G322400 Sobic001G072000--Sobic005G050400 Sobic001G072000--Sobic001G112600 Sobic001G072000--Sobic004G279200 Sobic008G156600 Sobic008G156600 Sobic001G072000--Sobic008G156600 Sobic001G432200 Sobic001G432200 Sobic001G072000--Sobic001G432200 Sobic009G163100 Sobic009G163100 Sobic001G072000--Sobic009G163100 Sobic009G242200 Sobic009G242200 Sobic001G072000--Sobic009G242200 Sobic001G072000--Sobic004G038500 Sobic004G279200--Sobic001G072000 Sobic006G070564 Sobic006G070564 Sobic004G279200--Sobic006G070564 Sobic004G279200--Sobic005G050400 Sobic004G279200--Sobic001G322400 Sobic001G414650 Sobic001G414650 Sobic004G279200--Sobic001G414650 Sobic004G062200 Sobic004G062200 Sobic004G279200--Sobic004G062200 Sobic004G279200--Sobic006G267100 Sobic006G171600 Sobic006G171600 Sobic004G279200--Sobic006G171600 Sobic004G279200--Sobic001G112600 Sobic001G230801--Sobic004G038500 Sobic001G230801--Sobic001G072000 Sobic001G230801--Sobic005G050400 Sobic001G230801--Sobic008G156600 Sobic001G230801--Sobic001G112600 Sobic001G230801--Sobic003G005700 Sobic004G180100 Sobic004G180100 Sobic001G230801--Sobic004G180100 Sobic005G144000 Sobic005G144000 Sobic001G230801--Sobic005G144000 Sobic001G230801--Sobic004G279200 Sobic008G071300 Sobic008G071300 Sobic006G267100--Sobic008G071300 Sobic006G267100--Sobic001G414650 Sobic002G340600 Sobic002G340600 Sobic006G267100--Sobic002G340600 Sobic003G114600 Sobic003G114600 Sobic006G267100--Sobic003G114600 Sobic002G283200 Sobic002G283200 Sobic006G267100--Sobic002G283200 Sobic006G105100 Sobic006G105100 Sobic006G267100--Sobic006G105100 Sobic004G042501 Sobic004G042501 Sobic006G267100--Sobic004G042501 Sobic002G380300 Sobic002G380300 Sobic006G267100--Sobic002G380300 Sobic003G290500 Sobic003G290500 Sobic006G267100--Sobic003G290500 Sobic007G101600 Sobic007G101600 Sobic004G074900--Sobic007G101600 Sobic008G141600 Sobic008G141600 Sobic004G074900--Sobic008G141600 Sobic003G238250 Sobic003G238250 Sobic004G074900--Sobic003G238250 Sobic002G102300 Sobic002G102300 Sobic004G074900--Sobic002G102300 Sobic001G286900 Sobic001G286900 Sobic004G074900--Sobic001G286900 Sobic004G074900--Sobic006G267100 Sobic004G074900--Sobic004G038500 Sobic007G138000 Sobic007G138000 Sobic004G074900--Sobic007G138000 Sobic010G006800 Sobic010G006800 Sobic004G074900--Sobic010G006800 Sobic001G322400--Sobic001G072000 Sobic010G073900 Sobic010G073900 Sobic001G322400--Sobic010G073900 Sobic001G322400--Sobic001G432200 Sobic008G166100 Sobic008G166100 Sobic001G322400--Sobic008G166100 Sobic001G322400--Sobic004G279200 Sobic007G048101 Sobic007G048101 Sobic001G322400--Sobic007G048101 Sobic009G202000 Sobic009G202000 Sobic001G322400--Sobic009G202000 Sobic009G238650 Sobic009G238650 Sobic001G322400--Sobic009G238650 Sobic003G407700 Sobic003G407700 Sobic001G322400--Sobic003G407700 Sobic009G145000 Sobic009G145000 Sobic003G005700--Sobic009G145000 Sobic003G005700--Sobic001G432200 Sobic001G133400 Sobic001G133400 Sobic003G005700--Sobic001G133400 Sobic002G097200 Sobic002G097200 Sobic003G005700--Sobic002G097200 Sobic009G048700 Sobic009G048700 Sobic003G005700--Sobic009G048700 Sobic007G109301 Sobic007G109301 Sobic003G005700--Sobic007G109301 Sobic002G060101 Sobic002G060101 Sobic003G005700--Sobic002G060101 Sobic007G212500 Sobic007G212500 Sobic003G005700--Sobic007G212500 Sobic002G364700 Sobic002G364700 Sobic003G005700--Sobic002G364700 Sobic005G050400--Sobic001G112600 Sobic005G050400--Sobic001G072000 Sobic005G050400--Sobic008G156600 Sobic005G050400--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic005G050400--Sobic002G170100 Sobic003G441000 Sobic003G441000 Sobic005G050400--Sobic003G441000 Sobic004G007400 Sobic004G007400 Sobic005G050400--Sobic004G007400 Sobic005G050400--Sobic005G144000 Sobic005G050400--Sobic009G163100 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic001G112600--Sobic003G441000 Sobic001G112600--Sobic002G170100 Sobic001G112600--Sobic001G414650 Sobic003G244400 Sobic003G244400 Sobic001G112600--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic001G112600--Sobic008G055200 Sobic004G358000 Sobic004G358000 Sobic001G112600--Sobic004G358000 Sobic001G112600--Sobic005G144000
Octagon: transcription factors


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