Gene annotation
Transcriptome id Sobic.003G349900.1
Synonym Sb03g039290
Functional annotation 50S ribosomal protein L17, putative, expressed
UniProt C5XP43
Pfam PF01196
Panther DB PTHR14413
NCBI CDD KOG3280; Mitochondrial/chloroplast ribosomal protein L17
KEGG Orthology K02879; RP-L17, MRPL17, large subunit ribosomal protein L17
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G64650 : Ribosomal protein L17 family protein
RAP-DB (Rice) LOC_Os01g62210.1 : 50S ribosomal protein L17, putative, expressed
MaizeGDB (Corn) Zm00025a039691
Brachypodium KQK05895 , KQK10501
Barley HORVU1Hr1G072170.25 , HORVU1Hr1G072170.27 , HORVU1Hr1G072170.31 , HORVU1Hr1G072170.36 , HORVU1Hr1G072170.34 , HORVU1Hr1G072170.35 , HORVU3Hr1G086630.4 , HORVU3Hr1G086630.5 , HORVU3Hr1G086630.6 , HORVU3Hr1G086630.7 , HORVU3Hr1G086630.1 , HORVU3Hr1G086630.2 , HORVU3Hr1G086630.3 , HORVU3Hr1G086630.8 , HORVU3Hr1G086630.9 , HORVU1Hr1G072170.7
Wheat TraesCS3A02G357200 , TraesCS3D02G351100 , TraesCS3D02G351100 , TraesCS1B02G294700 , TraesCS1D02G284500 , TraesCS3B02G389800 , TraesCS1A02G285500
Populus -


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cDNA sequences
Sobic.003G349900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
2 Sobic.006G267100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.004G038500 cyclin-related protein, putative, expressed -
4 Sobic.009G242600 ATPCME, putative, expressed K15889: prenylcysteine alpha-carboxyl methylesterase
5 Sobic.006G070564 - K01193: INV, beta-fructofuranosidase
6 Sobic.002G389600 transcription regulator, putative, expressed -
7 Sobic.003G211800 expressed protein -
8 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase
9 Sobic.002G362500 expressed protein -
10 Sobic.004G074900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
11 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
12 Sobic.006G189300 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
13 Sobic.003G286000 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.002G414800 PPR repeat domain containing protein, putative, expressed -
15 Sobic.001G039100 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
16 Sobic.002G123300 expressed protein -
17 Sobic.007G138000 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
18 Sobic.001G240600 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
19 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
20 Sobic.002G418300 vacuolar-sorting receptor precursor, putative, expressed -


Gene co-expression network
sample Sobic003G349900 Sobic003G349900 Sobic004G279200 Sobic004G279200 Sobic003G349900--Sobic004G279200 Sobic006G267100 Sobic006G267100 Sobic003G349900--Sobic006G267100 Sobic004G038500 Sobic004G038500 Sobic003G349900--Sobic004G038500 Sobic009G242600 Sobic009G242600 Sobic003G349900--Sobic009G242600 Sobic006G070564 Sobic006G070564 Sobic003G349900--Sobic006G070564 Sobic002G389600 Sobic002G389600 Sobic003G349900--Sobic002G389600 Sobic003G211800 Sobic003G211800 Sobic003G349900--Sobic003G211800 Sobic001G414650 Sobic001G414650 Sobic003G349900--Sobic001G414650 Sobic002G362500 Sobic002G362500 Sobic003G349900--Sobic002G362500 Sobic001G072000 Sobic001G072000 Sobic004G279200--Sobic001G072000 Sobic004G279200--Sobic006G070564 Sobic005G050400 Sobic005G050400 Sobic004G279200--Sobic005G050400 Sobic001G322400 Sobic001G322400 Sobic004G279200--Sobic001G322400 Sobic004G279200--Sobic001G414650 Sobic004G062200 Sobic004G062200 Sobic004G279200--Sobic004G062200 Sobic004G279200--Sobic006G267100 Sobic006G171600 Sobic006G171600 Sobic004G279200--Sobic006G171600 Sobic001G112600 Sobic001G112600 Sobic004G279200--Sobic001G112600 Sobic008G071300 Sobic008G071300 Sobic006G267100--Sobic008G071300 Sobic006G267100--Sobic001G414650 Sobic002G340600 Sobic002G340600 Sobic006G267100--Sobic002G340600 Sobic003G114600 Sobic003G114600 Sobic006G267100--Sobic003G114600 Sobic002G283200 Sobic002G283200 Sobic006G267100--Sobic002G283200 Sobic006G105100 Sobic006G105100 Sobic006G267100--Sobic006G105100 Sobic004G042501 Sobic004G042501 Sobic006G267100--Sobic004G042501 Sobic002G380300 Sobic002G380300 Sobic006G267100--Sobic002G380300 Sobic003G290500 Sobic003G290500 Sobic006G267100--Sobic003G290500 Sobic004G038500--Sobic001G072000 Sobic004G038500--Sobic004G279200 Sobic001G230801 Sobic001G230801 Sobic004G038500--Sobic001G230801 Sobic004G038500--Sobic006G267100 Sobic004G074900 Sobic004G074900 Sobic004G038500--Sobic004G074900 Sobic004G038500--Sobic001G322400 Sobic003G005700 Sobic003G005700 Sobic004G038500--Sobic003G005700 Sobic004G038500--Sobic005G050400 Sobic004G038500--Sobic001G112600 Sobic006G204500 Sobic006G204500 Sobic009G242600--Sobic006G204500 Sobic010G003200 Sobic010G003200 Sobic009G242600--Sobic010G003200 Sobic002G364700 Sobic002G364700 Sobic009G242600--Sobic002G364700 Sobic001G432200 Sobic001G432200 Sobic009G242600--Sobic001G432200 Sobic003G024100 Sobic003G024100 Sobic009G242600--Sobic003G024100 Sobic004G273600 Sobic004G273600 Sobic009G242600--Sobic004G273600 Sobic009G061500 Sobic009G061500 Sobic009G242600--Sobic009G061500 Sobic001G240600 Sobic001G240600 Sobic009G242600--Sobic001G240600 Sobic001G142501 Sobic001G142501 Sobic009G242600--Sobic001G142501 Sobic001G039100 Sobic001G039100 Sobic006G070564--Sobic001G039100 Sobic006G070564--Sobic004G279200 Sobic006G189300 Sobic006G189300 Sobic006G070564--Sobic006G189300 Sobic002G404600 Sobic002G404600 Sobic006G070564--Sobic002G404600 Sobic001G503600 Sobic001G503600 Sobic006G070564--Sobic001G503600 Sobic006G070564--Sobic001G414650 Sobic010G038300 Sobic010G038300 Sobic006G070564--Sobic010G038300 Sobic001G357400 Sobic001G357400 Sobic006G070564--Sobic001G357400 Sobic007G196700 Sobic007G196700 Sobic006G070564--Sobic007G196700 Sobic008G136601 Sobic008G136601 Sobic002G389600--Sobic008G136601 Sobic008G148600 Sobic008G148600 Sobic002G389600--Sobic008G148600 Sobic006G069766 Sobic006G069766 Sobic002G389600--Sobic006G069766 Sobic002G389600--Sobic009G061500 Sobic001G340800 Sobic001G340800 Sobic002G389600--Sobic001G340800 Sobic003G304600 Sobic003G304600 Sobic002G389600--Sobic003G304600 Sobic002G389600--Sobic006G105100 Sobic004G358000 Sobic004G358000 Sobic002G389600--Sobic004G358000 Sobic002G389600--Sobic002G380300 Sobic002G418300 Sobic002G418300 Sobic003G211800--Sobic002G418300 Sobic001G417700 Sobic001G417700 Sobic003G211800--Sobic001G417700 Sobic009G048700 Sobic009G048700 Sobic003G211800--Sobic009G048700 Sobic009G145000 Sobic009G145000 Sobic003G211800--Sobic009G145000 Sobic009G008000 Sobic009G008000 Sobic003G211800--Sobic009G008000 Sobic002G243400 Sobic002G243400 Sobic003G211800--Sobic002G243400 Sobic008G056600 Sobic008G056600 Sobic003G211800--Sobic008G056600 Sobic001G136000 Sobic001G136000 Sobic003G211800--Sobic001G136000 Sobic002G099700 Sobic002G099700 Sobic003G211800--Sobic002G099700 Sobic001G414650--Sobic001G357400 Sobic001G414650--Sobic002G404600 Sobic008G055200 Sobic008G055200 Sobic001G414650--Sobic008G055200 Sobic002G381500 Sobic002G381500 Sobic001G414650--Sobic002G381500 Sobic007G070900 Sobic007G070900 Sobic001G414650--Sobic007G070900 Sobic001G414650--Sobic006G105100 Sobic004G054900 Sobic004G054900 Sobic001G414650--Sobic004G054900 Sobic009G110600 Sobic009G110600 Sobic001G414650--Sobic009G110600 Sobic001G337100 Sobic001G337100 Sobic001G414650--Sobic001G337100 Sobic002G362500--Sobic001G322400 Sobic002G362500--Sobic001G072000 Sobic009G201000 Sobic009G201000 Sobic002G362500--Sobic009G201000 Sobic008G166100 Sobic008G166100 Sobic002G362500--Sobic008G166100 Sobic007G039200 Sobic007G039200 Sobic002G362500--Sobic007G039200 Sobic009G163100 Sobic009G163100 Sobic002G362500--Sobic009G163100 Sobic004G113600 Sobic004G113600 Sobic002G362500--Sobic004G113600 Sobic001G387300 Sobic001G387300 Sobic002G362500--Sobic001G387300 Sobic002G362500--Sobic004G074900
Octagon: transcription factors


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