Gene annotation
Transcriptome id Sobic.001G240600.1
Synonym Sb01g021297, ATTBP2, TBP2
Functional annotation TATA-binding protein, putative, expressed
UniProt C5X0L0
Pfam PF00352
Panther DB PTHR10126 PTHR10126:SF23
NCBI CDD KOG3302; TATA-box binding protein (TBP), component of TFIID and TFIIIB
KEGG Orthology K03120; TBP, transcription initiation factor TFIID TATA-box-binding protein
Gene Ontology GO:0006352; DNA-templated transcription, initiation GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G55520 : TATA binding protein 2
RAP-DB (Rice) LOC_Os03g45410.1 : TATA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a017201
Brachypodium -
Barley HORVU1Hr1G035600.5 , HORVU1Hr1G035600.4 , HORVU1Hr1G035600.7 , HORVU1Hr1G035600.1 , HORVU1Hr1G035600.2 , HORVU1Hr1G035600.9 , HORVU1Hr1G035600.8 , HORVU1Hr1G035600.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G266400 B3 DNA binding domain containing protein, expressed -
2 Sobic.010G177200 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
3 Sobic.003G070400 expressed protein -
4 Sobic.009G068400 SSRP1-like FACT complex subunit, putative, expressed K09272: structure-specific recognition protein 1
5 Sobic.007G197000 "Candidate orthologue to the wheat Pm40 gene, probable glucan endo-1,3-betaglucosidase A6"(PubMedID : 27755575)@glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
6 Sobic.004G273600 RNA recognition motif containing protein, putative, expressed -
7 Sobic.009G207700 cell cycle control protein, putative, expressed -
8 Sobic.006G236400 glutaredoxin, putative, expressed -
9 Sobic.010G242600 OsFBDUF52 - F-box and DUF domain containing protein, expressed -
10 Sobic.009G250300 Ser/Thr protein phosphatase family protein, putative, expressed -
11 Sobic.001G402900 methyltransferase domain containing protein, expressed -
12 Sobic.006G205400 villin protein, putative, expressed -
13 Sobic.007G128000 cytochrome P450, putative, expressed -
14 Sobic.002G189500 expressed protein -
15 Sobic.004G054900 expressed protein -
16 Sobic.002G279900 beta-galactosidase precursor, putative, expressed -
17 Sobic.005G037700 OsFBX378 - F-box domain containing protein, expressed -
18 Sobic.002G101600 - -
19 Sobic.003G420500 Ca ATPase 3(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
20 Sobic.006G074150 - -


Gene co-expression network
sample Sobic001G240600 Sobic001G240600 Sobic006G266400 Sobic006G266400 Sobic001G240600--Sobic006G266400 Sobic010G177200 Sobic010G177200 Sobic001G240600--Sobic010G177200 Sobic003G070400 Sobic003G070400 Sobic001G240600--Sobic003G070400 Sobic009G068400 Sobic009G068400 Sobic001G240600--Sobic009G068400 Sobic007G197000 Sobic007G197000 Sobic001G240600--Sobic007G197000 Sobic004G273600 Sobic004G273600 Sobic001G240600--Sobic004G273600 Sobic009G207700 Sobic009G207700 Sobic001G240600--Sobic009G207700 Sobic006G236400 Sobic006G236400 Sobic001G240600--Sobic006G236400 Sobic010G242600 Sobic010G242600 Sobic001G240600--Sobic010G242600 Sobic002G101600 Sobic002G101600 Sobic006G266400--Sobic002G101600 Sobic002G189500 Sobic002G189500 Sobic006G266400--Sobic002G189500 Sobic006G266400--Sobic010G242600 Sobic006G266400--Sobic010G177200 Sobic006G266400--Sobic001G240600 Sobic001G029300 Sobic001G029300 Sobic006G266400--Sobic001G029300 Sobic009G250300 Sobic009G250300 Sobic006G266400--Sobic009G250300 Sobic002G015900 Sobic002G015900 Sobic006G266400--Sobic002G015900 Sobic006G266400--Sobic003G070400 Sobic010G177200--Sobic002G015900 Sobic010G177200--Sobic009G250300 Sobic001G063300 Sobic001G063300 Sobic010G177200--Sobic001G063300 Sobic010G177200--Sobic009G207700 Sobic006G074150 Sobic006G074150 Sobic010G177200--Sobic006G074150 Sobic006G205400 Sobic006G205400 Sobic010G177200--Sobic006G205400 Sobic007G145500 Sobic007G145500 Sobic010G177200--Sobic007G145500 Sobic010G207800 Sobic010G207800 Sobic010G177200--Sobic010G207800 Sobic010G216100 Sobic010G216100 Sobic010G177200--Sobic010G216100 Sobic003G070400--Sobic007G197000 Sobic007G204200 Sobic007G204200 Sobic003G070400--Sobic007G204200 Sobic010G121700 Sobic010G121700 Sobic003G070400--Sobic010G121700 Sobic003G070400--Sobic009G068400 Sobic009G234900 Sobic009G234900 Sobic003G070400--Sobic009G234900 Sobic008G024200 Sobic008G024200 Sobic003G070400--Sobic008G024200 Sobic003G004000 Sobic003G004000 Sobic003G070400--Sobic003G004000 Sobic005G037700 Sobic005G037700 Sobic003G070400--Sobic005G037700 Sobic009G047100 Sobic009G047100 Sobic003G070400--Sobic009G047100 Sobic009G068400--Sobic003G070400 Sobic009G068400--Sobic007G197000 Sobic009G068400--Sobic005G037700 Sobic009G068400--Sobic007G204200 Sobic009G068400--Sobic003G004000 Sobic004G192600 Sobic004G192600 Sobic009G068400--Sobic004G192600 Sobic001G089400 Sobic001G089400 Sobic009G068400--Sobic001G089400 Sobic008G074100 Sobic008G074100 Sobic009G068400--Sobic008G074100 Sobic009G068400--Sobic010G121700 Sobic007G197000--Sobic005G037700 Sobic003G420500 Sobic003G420500 Sobic007G197000--Sobic003G420500 Sobic007G197000--Sobic004G192600 Sobic007G197000--Sobic001G089400 Sobic007G197000--Sobic003G004000 Sobic008G043200 Sobic008G043200 Sobic007G197000--Sobic008G043200 Sobic007G197000--Sobic007G204200 Sobic005G145400 Sobic005G145400 Sobic007G197000--Sobic005G145400 Sobic001G525600 Sobic001G525600 Sobic007G197000--Sobic001G525600 Sobic010G001200 Sobic010G001200 Sobic004G273600--Sobic010G001200 Sobic002G125100 Sobic002G125100 Sobic004G273600--Sobic002G125100 Sobic002G279900 Sobic002G279900 Sobic004G273600--Sobic002G279900 Sobic004G273600--Sobic005G145400 Sobic001G135950 Sobic001G135950 Sobic004G273600--Sobic001G135950 Sobic004G099200 Sobic004G099200 Sobic004G273600--Sobic004G099200 Sobic009G105100 Sobic009G105100 Sobic004G273600--Sobic009G105100 Sobic002G254700 Sobic002G254700 Sobic004G273600--Sobic002G254700 Sobic004G071900 Sobic004G071900 Sobic004G273600--Sobic004G071900 Sobic009G207700--Sobic006G074150 Sobic001G093100 Sobic001G093100 Sobic009G207700--Sobic001G093100 Sobic009G207700--Sobic010G177200 Sobic005G040700 Sobic005G040700 Sobic009G207700--Sobic005G040700 Sobic010G051000 Sobic010G051000 Sobic009G207700--Sobic010G051000 Sobic001G306500 Sobic001G306500 Sobic009G207700--Sobic001G306500 Sobic001G024900 Sobic001G024900 Sobic009G207700--Sobic001G024900 Sobic007G222100 Sobic007G222100 Sobic009G207700--Sobic007G222100 Sobic001G288400 Sobic001G288400 Sobic009G207700--Sobic001G288400 Sobic007G042800 Sobic007G042800 Sobic006G236400--Sobic007G042800 Sobic006G236400--Sobic009G207700 Sobic006G236400--Sobic010G177200 Sobic006G236400--Sobic006G074150 Sobic004G255900 Sobic004G255900 Sobic006G236400--Sobic004G255900 Sobic005G191300 Sobic005G191300 Sobic006G236400--Sobic005G191300 Sobic008G043300 Sobic008G043300 Sobic006G236400--Sobic008G043300 Sobic001G092500 Sobic001G092500 Sobic006G236400--Sobic001G092500 Sobic004G134000 Sobic004G134000 Sobic006G236400--Sobic004G134000 Sobic010G242600--Sobic006G266400 Sobic010G242600--Sobic001G029300 Sobic010G242600--Sobic002G189500 Sobic001G163666 Sobic001G163666 Sobic010G242600--Sobic001G163666 Sobic010G242600--Sobic009G207700 Sobic010G242600--Sobic010G177200 Sobic010G242600--Sobic002G101600 Sobic010G242600--Sobic006G236400 Sobic010G242600--Sobic002G015900
Octagon: transcription factors


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