Gene annotation
Transcriptome id Sobic.010G177200.1,Sobic.010G177200.2
Synonym Sb10g022900, PAB3
Functional annotation polyadenylate-binding protein, putative, expressed
UniProt A0A1W0VTP7 , C5Z568
Pfam PF00658 PF00076
Panther DB PTHR24012 PTHR24012:SF365 PTHR24012 PTHR24012:SF366
NCBI CDD KOG0123; Polyadenylate-binding protein (RRM superfamily)
KEGG Orthology K13126; polyadenylate-binding protein
Gene Ontology GO:0003723; RNA binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G22760 : poly(A)-binding protein 5,poly(A) binding protein 3
RAP-DB (Rice) LOC_Os06g38980.1 : polyadenylate-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a051270
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G015900 OsFBLD4 - F-box, LRR and FBD domain containing protein, expressed -
2 Sobic.009G250300 Ser/Thr protein phosphatase family protein, putative, expressed -
3 Sobic.001G063300 CAMK_CAMK_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
4 Sobic.009G207700 cell cycle control protein, putative, expressed -
5 Sobic.006G074150 - -
6 Sobic.006G205400 villin protein, putative, expressed -
7 Sobic.007G145500 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
8 Sobic.010G207800 E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
9 Sobic.010G216100 leaf senescence related protein, putative, expressed -
10 Sobic.001G261416 - K01858: INO1, myo-inositol-1-phosphate synthase
11 Sobic.001G337100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17795: mitochondrial import inner membrane translocase subunit TIM17
12 Sobic.006G005300 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
13 Sobic.001G287400 VQ domain containing protein, putative, expressed -
14 Sobic.010G090200 OsMADS63 - MADS-box family gene with MIKC , type-box, expressed -
15 Sobic.001G332000 pollen allergen, putative, expressed -
16 Sobic.007G215200 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
17 Sobic.005G040700 amino acid permease family protein, putative, expressed -
18 Sobic.001G329200 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
19 Sobic.007G014000 OsFBX142 - F-box domain containing protein, expressed -
20 Sobic.001G171300 UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase


Gene co-expression network
sample Sobic010G177200 Sobic010G177200 Sobic002G015900 Sobic002G015900 Sobic010G177200--Sobic002G015900 Sobic009G250300 Sobic009G250300 Sobic010G177200--Sobic009G250300 Sobic001G063300 Sobic001G063300 Sobic010G177200--Sobic001G063300 Sobic009G207700 Sobic009G207700 Sobic010G177200--Sobic009G207700 Sobic006G074150 Sobic006G074150 Sobic010G177200--Sobic006G074150 Sobic006G205400 Sobic006G205400 Sobic010G177200--Sobic006G205400 Sobic007G145500 Sobic007G145500 Sobic010G177200--Sobic007G145500 Sobic010G207800 Sobic010G207800 Sobic010G177200--Sobic010G207800 Sobic010G216100 Sobic010G216100 Sobic010G177200--Sobic010G216100 Sobic002G015900--Sobic009G250300 Sobic001G337100 Sobic001G337100 Sobic002G015900--Sobic001G337100 Sobic002G015900--Sobic001G063300 Sobic008G086500 Sobic008G086500 Sobic002G015900--Sobic008G086500 Sobic005G006400 Sobic005G006400 Sobic002G015900--Sobic005G006400 Sobic002G194201 Sobic002G194201 Sobic002G015900--Sobic002G194201 Sobic003G007650 Sobic003G007650 Sobic002G015900--Sobic003G007650 Sobic007G035200 Sobic007G035200 Sobic002G015900--Sobic007G035200 Sobic007G134501 Sobic007G134501 Sobic002G015900--Sobic007G134501 Sobic009G250300--Sobic002G015900 Sobic009G250300--Sobic001G337100 Sobic004G054900 Sobic004G054900 Sobic009G250300--Sobic004G054900 Sobic009G250300--Sobic007G134501 Sobic009G250300--Sobic002G194201 Sobic007G122600 Sobic007G122600 Sobic009G250300--Sobic007G122600 Sobic005G006100 Sobic005G006100 Sobic009G250300--Sobic005G006100 Sobic005G040100 Sobic005G040100 Sobic009G250300--Sobic005G040100 Sobic009G250300--Sobic003G007650 Sobic001G261416 Sobic001G261416 Sobic001G063300--Sobic001G261416 Sobic010G090200 Sobic010G090200 Sobic001G063300--Sobic010G090200 Sobic001G063300--Sobic010G207800 Sobic001G063300--Sobic010G216100 Sobic007G014000 Sobic007G014000 Sobic001G063300--Sobic007G014000 Sobic010G240300 Sobic010G240300 Sobic001G063300--Sobic010G240300 Sobic007G215200 Sobic007G215200 Sobic001G063300--Sobic007G215200 Sobic001G287400 Sobic001G287400 Sobic001G063300--Sobic001G287400 Sobic001G063300--Sobic005G006100 Sobic009G207700--Sobic006G074150 Sobic001G093100 Sobic001G093100 Sobic009G207700--Sobic001G093100 Sobic009G207700--Sobic010G177200 Sobic005G040700 Sobic005G040700 Sobic009G207700--Sobic005G040700 Sobic010G051000 Sobic010G051000 Sobic009G207700--Sobic010G051000 Sobic001G306500 Sobic001G306500 Sobic009G207700--Sobic001G306500 Sobic001G024900 Sobic001G024900 Sobic009G207700--Sobic001G024900 Sobic007G222100 Sobic007G222100 Sobic009G207700--Sobic007G222100 Sobic001G288400 Sobic001G288400 Sobic009G207700--Sobic001G288400 Sobic006G074150--Sobic009G207700 Sobic006G074150--Sobic001G093100 Sobic006G074150--Sobic005G040700 Sobic001G130500 Sobic001G130500 Sobic006G074150--Sobic001G130500 Sobic006G074150--Sobic010G051000 Sobic006G074150--Sobic001G306500 Sobic003G175950 Sobic003G175950 Sobic006G074150--Sobic003G175950 Sobic006G074150--Sobic007G222100 Sobic009G203900 Sobic009G203900 Sobic006G074150--Sobic009G203900 Sobic001G212500 Sobic001G212500 Sobic006G205400--Sobic001G212500 Sobic008G043200 Sobic008G043200 Sobic006G205400--Sobic008G043200 Sobic002G254700 Sobic002G254700 Sobic006G205400--Sobic002G254700 Sobic009G175400 Sobic009G175400 Sobic006G205400--Sobic009G175400 Sobic006G205400--Sobic001G063300 Sobic001G332000 Sobic001G332000 Sobic006G205400--Sobic001G332000 Sobic010G276100 Sobic010G276100 Sobic006G205400--Sobic010G276100 Sobic006G205400--Sobic007G215200 Sobic010G040400 Sobic010G040400 Sobic006G205400--Sobic010G040400 Sobic001G165700 Sobic001G165700 Sobic007G145500--Sobic001G165700 Sobic001G171300 Sobic001G171300 Sobic007G145500--Sobic001G171300 Sobic007G145500--Sobic001G287400 Sobic007G145500--Sobic001G261416 Sobic010G215000 Sobic010G215000 Sobic007G145500--Sobic010G215000 Sobic001G329200 Sobic001G329200 Sobic007G145500--Sobic001G329200 Sobic007G145500--Sobic003G175950 Sobic007G145500--Sobic001G130500 Sobic006G005300 Sobic006G005300 Sobic007G145500--Sobic006G005300 Sobic010G207800--Sobic007G014000 Sobic010G207800--Sobic007G215200 Sobic010G207800--Sobic001G261416 Sobic010G207800--Sobic010G090200 Sobic010G207800--Sobic010G216100 Sobic010G207800--Sobic005G006100 Sobic010G207800--Sobic010G240300 Sobic001G167300 Sobic001G167300 Sobic010G207800--Sobic001G167300 Sobic010G207800--Sobic001G287400 Sobic010G216100--Sobic007G014000 Sobic010G216100--Sobic010G240300 Sobic010G216100--Sobic010G090200 Sobic010G216100--Sobic001G261416 Sobic010G216100--Sobic008G086500 Sobic010G216100--Sobic005G006400 Sobic002G194300 Sobic002G194300 Sobic010G216100--Sobic002G194300 Sobic010G216100--Sobic010G215000 Sobic010G216100--Sobic010G207800
Octagon: transcription factors


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