Gene annotation
Transcriptome id Sobic.009G068400.1,Sobic.009G068400.2
Synonym HMG, Sb09g005650, NFD, SSRP1, ATHMG
Functional annotation SSRP1-like FACT complex subunit, putative, expressed
UniProt C5YU80 , A0A1Z5R1A8
Pfam PF00505 PF08512 PF03531
Panther DB PTHR13711 PTHR13711:SF199
NCBI CDD -
KEGG Orthology K09272; structure-specific recognition protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G28730 : high mobility group
RAP-DB (Rice) LOC_Os05g08970.1 : SSRP1-like FACT complex subunit, putative, expressed
MaizeGDB (Corn) Zm00025a035826 , Zm00025a043023
Brachypodium KQK07178 , KQK07179 , KQK03080 , KQK03079
Barley HORVU3Hr1G020300.10 , HORVU3Hr1G020300.40 , HORVU1Hr1G027620.4 , HORVU3Hr1G020300.27 , HORVU3Hr1G020300.26 , HORVU3Hr1G020300.24 , HORVU3Hr1G020300.23 , HORVU3Hr1G020300.22 , HORVU3Hr1G020300.21 , HORVU3Hr1G020300.20 , HORVU3Hr1G020300.29 , HORVU3Hr1G020300.28 , HORVU3Hr1G020300.34 , HORVU3Hr1G020300.35 , HORVU3Hr1G020300.36 , HORVU3Hr1G020300.37 , HORVU3Hr1G020300.30 , HORVU3Hr1G020300.31 , HORVU3Hr1G020300.32 , HORVU3Hr1G020300.33 , HORVU3Hr1G020300.38 , HORVU1Hr1G027620.10 , HORVU1Hr1G027620.11 , HORVU3Hr1G020300.19 , HORVU3Hr1G020300.17 , HORVU3Hr1G020300.15 , HORVU3Hr1G020300.12 , HORVU3Hr1G020300.13 , HORVU3Hr1G020300.11 , HORVU1Hr1G027620.5 , HORVU1Hr1G027620.6 , HORVU1Hr1G027620.7 , HORVU1Hr1G027620.1 , HORVU1Hr1G027620.2 , HORVU1Hr1G027620.3 , HORVU1Hr1G027620.8 , HORVU1Hr1G027620.9 , HORVU3Hr1G020300.8 , HORVU3Hr1G020300.9 , HORVU3Hr1G020300.4 , HORVU3Hr1G020300.5 , HORVU3Hr1G020300.6 , HORVU3Hr1G020300.7 , HORVU3Hr1G020300.1 , HORVU3Hr1G020300.2 , HORVU3Hr1G020300.3
Wheat TraesCS1A02G121000 , TraesCS1B02G140400 , TraesCS1B02G140400 , TraesCS1B02G140400 , TraesCS1D02G121900 , TraesCS1D02G121900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G070400 expressed protein -
2 Sobic.007G197000 "Candidate orthologue to the wheat Pm40 gene, probable glucan endo-1,3-betaglucosidase A6"(PubMedID : 27755575)@glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
3 Sobic.005G037700 OsFBX378 - F-box domain containing protein, expressed -
4 Sobic.007G204200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.003G004000 - -
6 Sobic.004G192600 LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
7 Sobic.001G089400 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
8 Sobic.008G074100 - -
9 Sobic.010G121700 plastocyanin-like domain containing protein, putative, expressed -
10 Sobic.003G420500 Ca ATPase 3(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
11 Sobic.001G167300 - -
12 Sobic.009G234900 WRKY43, expressed -
13 Sobic.008G024200 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
14 Sobic.008G043200 - -
15 Sobic.005G145400 RNA recognition motif containing protein, putative, expressed -
16 Sobic.005G189100 transcription factor Dp, putative, expressed -
17 Sobic.001G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
18 Sobic.009G047100 GEX1, putative, expressed -
19 Sobic.001G063300 CAMK_CAMK_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
20 Sobic.002G006200 - -


Gene co-expression network
sample Sobic009G068400 Sobic009G068400 Sobic003G070400 Sobic003G070400 Sobic009G068400--Sobic003G070400 Sobic007G197000 Sobic007G197000 Sobic009G068400--Sobic007G197000 Sobic005G037700 Sobic005G037700 Sobic009G068400--Sobic005G037700 Sobic007G204200 Sobic007G204200 Sobic009G068400--Sobic007G204200 Sobic003G004000 Sobic003G004000 Sobic009G068400--Sobic003G004000 Sobic004G192600 Sobic004G192600 Sobic009G068400--Sobic004G192600 Sobic001G089400 Sobic001G089400 Sobic009G068400--Sobic001G089400 Sobic008G074100 Sobic008G074100 Sobic009G068400--Sobic008G074100 Sobic010G121700 Sobic010G121700 Sobic009G068400--Sobic010G121700 Sobic003G070400--Sobic007G197000 Sobic003G070400--Sobic007G204200 Sobic003G070400--Sobic010G121700 Sobic003G070400--Sobic009G068400 Sobic009G234900 Sobic009G234900 Sobic003G070400--Sobic009G234900 Sobic008G024200 Sobic008G024200 Sobic003G070400--Sobic008G024200 Sobic003G070400--Sobic003G004000 Sobic003G070400--Sobic005G037700 Sobic009G047100 Sobic009G047100 Sobic003G070400--Sobic009G047100 Sobic007G197000--Sobic005G037700 Sobic003G420500 Sobic003G420500 Sobic007G197000--Sobic003G420500 Sobic007G197000--Sobic004G192600 Sobic007G197000--Sobic001G089400 Sobic007G197000--Sobic003G004000 Sobic008G043200 Sobic008G043200 Sobic007G197000--Sobic008G043200 Sobic007G197000--Sobic007G204200 Sobic005G145400 Sobic005G145400 Sobic007G197000--Sobic005G145400 Sobic001G525600 Sobic001G525600 Sobic007G197000--Sobic001G525600 Sobic005G037700--Sobic003G420500 Sobic005G037700--Sobic001G089400 Sobic005G037700--Sobic004G192600 Sobic005G037700--Sobic005G145400 Sobic005G037700--Sobic007G204200 Sobic005G037700--Sobic007G197000 Sobic005G037700--Sobic003G004000 Sobic005G037700--Sobic008G043200 Sobic005G037700--Sobic001G525600 Sobic007G204200--Sobic005G037700 Sobic007G204200--Sobic004G192600 Sobic007G204200--Sobic008G074100 Sobic007G204200--Sobic001G089400 Sobic007G204200--Sobic003G004000 Sobic007G204200--Sobic007G197000 Sobic007G204200--Sobic003G420500 Sobic007G204200--Sobic010G121700 Sobic007G204200--Sobic003G070400 Sobic001G167300 Sobic001G167300 Sobic003G004000--Sobic001G167300 Sobic003G004000--Sobic004G192600 Sobic003G004000--Sobic001G089400 Sobic003G004000--Sobic008G043200 Sobic003G004000--Sobic008G024200 Sobic010G207800 Sobic010G207800 Sobic003G004000--Sobic010G207800 Sobic003G004000--Sobic010G121700 Sobic005G006100 Sobic005G006100 Sobic003G004000--Sobic005G006100 Sobic003G004000--Sobic009G234900 Sobic004G192600--Sobic001G089400 Sobic004G192600--Sobic003G004000 Sobic004G192600--Sobic001G167300 Sobic004G192600--Sobic008G043200 Sobic004G192600--Sobic005G037700 Sobic004G192600--Sobic010G207800 Sobic004G192600--Sobic003G420500 Sobic010G016200 Sobic010G016200 Sobic004G192600--Sobic010G016200 Sobic007G215200 Sobic007G215200 Sobic004G192600--Sobic007G215200 Sobic001G089400--Sobic004G192600 Sobic001G089400--Sobic003G004000 Sobic001G089400--Sobic008G043200 Sobic001G089400--Sobic001G167300 Sobic001G089400--Sobic005G037700 Sobic001G089400--Sobic010G207800 Sobic001G089400--Sobic010G016200 Sobic001G089400--Sobic003G420500 Sobic001G089400--Sobic007G215200 Sobic008G074100--Sobic007G204200 Sobic008G074100--Sobic005G037700 Sobic008G074100--Sobic004G192600 Sobic008G074100--Sobic003G004000 Sobic008G074100--Sobic010G121700 Sobic008G074100--Sobic001G089400 Sobic008G074100--Sobic007G197000 Sobic008G074100--Sobic009G234900 Sobic008G074100--Sobic003G420500 Sobic010G121700--Sobic009G234900 Sobic005G189100 Sobic005G189100 Sobic010G121700--Sobic005G189100 Sobic010G121700--Sobic008G024200 Sobic001G089300 Sobic001G089300 Sobic010G121700--Sobic001G089300 Sobic010G121700--Sobic009G047100 Sobic002G006200 Sobic002G006200 Sobic010G121700--Sobic002G006200 Sobic002G156400 Sobic002G156400 Sobic010G121700--Sobic002G156400 Sobic008G138400 Sobic008G138400 Sobic010G121700--Sobic008G138400 Sobic002G097300 Sobic002G097300 Sobic010G121700--Sobic002G097300
Octagon: transcription factors


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