Gene annotation
Transcriptome id Sobic.001G089300.2
Synonym Sb01g008050
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
periplasmic beta-glucosidase precursor, putative, expressed
UniProt C5X143
Pfam PF01915 PF00933
Panther DB PTHR30620 PTHR30620:SF46
NCBI CDD -
KEGG Orthology K05349; beta-glucosidase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G04885 : Glycosyl hydrolase family protein
RAP-DB (Rice) LOC_Os03g53790.1 : periplasmic beta-glucosidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a016800 , Zm00025a016801 , Zm00025a008146 , Zm00025a008148 , Zm00025a034995
Brachypodium KQK13208 , KQK13203 , KQK13202 , KQK13201 , KQK13200 , KQK13204 , KQK13199
Barley HORVU5Hr1G095060.12 , HORVU5Hr1G095220.1 , HORVU5Hr1G095220.3 , HORVU5Hr1G095220.2 , HORVU5Hr1G095220.5 , HORVU5Hr1G095220.4 , HORVU5Hr1G095130.1 , HORVU5Hr1G095130.3 , HORVU5Hr1G095130.2 , HORVU5Hr1G095130.5 , HORVU5Hr1G095130.4 , HORVU5Hr1G095130.6 , HORVU5Hr1G095130.9 , HORVU5Hr1G095130.8 , HORVU5Hr1G095040.1 , HORVU5Hr1G095130.7 , HORVU5Hr1G095080.9 , HORVU5Hr1G095080.8 , HORVU5Hr1G095080.1 , HORVU5Hr1G095080.3 , HORVU5Hr1G095080.2 , HORVU5Hr1G095080.5 , HORVU5Hr1G095080.4 , HORVU5Hr1G095080.7 , HORVU5Hr1G095080.6 , HORVU2Hr1G107600.6 , HORVU2Hr1G107600.7 , HORVU2Hr1G107600.1 , HORVU5Hr1G095080.19 , HORVU5Hr1G095080.18 , HORVU5Hr1G095080.15 , HORVU5Hr1G095080.14 , HORVU5Hr1G095080.17 , HORVU5Hr1G095080.16 , HORVU5Hr1G095080.11 , HORVU5Hr1G095080.10 , HORVU5Hr1G095080.13 , HORVU5Hr1G095080.12 , HORVU2Hr1G119350.1 , HORVU2Hr1G119350.3 , HORVU2Hr1G119350.2 , HORVU2Hr1G119350.4 , HORVU5Hr1G095130.15 , HORVU5Hr1G095130.14 , HORVU5Hr1G095130.17 , HORVU5Hr1G095130.16 , HORVU5Hr1G095130.11 , HORVU5Hr1G095130.13 , HORVU5Hr1G095130.12 , HORVU5Hr1G095130.19 , HORVU5Hr1G095130.18 , HORVU5Hr1G095060.7 , HORVU5Hr1G095060.6 , HORVU5Hr1G095060.5 , HORVU5Hr1G095060.4 , HORVU5Hr1G095060.2 , HORVU5Hr1G095060.9 , HORVU5Hr1G095060.8 , HORVU5Hr1G095060.11 , HORVU5Hr1G095060.10
Wheat TraesCS5A02G388300 , TraesCS2B02G503000 , TraesCS2B02G503000 , TraesCS5D02G399000 , TraesCS5D02G399000 , TraesCS2D02G562400 , TraesCS5A02G388900 , TraesCS3D02G179000 , TraesCS5D02G398300 , TraesCS5D02G398300 , TraesCS5B02G393900 , TraesCS5B02G393700 , TraesCS2A02G591900 , TraesCS2A02G478500 , TraesCS5D02G398500 , TraesCS5B02G393800 , TraesCS5B02G394300 , TraesCS2B02G591900 , TraesCS2B02G591900 , TraesCS5B02G394200 , TraesCS5B02G394200 , TraesCS5B02G394200 , TraesCS5B02G394000 , TraesCS5A02G389100 , TraesCS5D02G399100 , TraesCS5D02G398400 , TraesCS5A02G388200 , TraesCS5A02G388400 , TraesCS5A02G389000 , TraesCS5A02G389000 , TraesCS5A02G389000 , TraesCS5D02G399000 , TraesCS3A02G172500
Populus -


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cDNA sequences
Sobic.001G089300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G189100 transcription factor Dp, putative, expressed -
2 Sobic.009G234900 WRKY43, expressed -
3 Sobic.002G006200 - -
4 Sobic.008G138400 expressed protein -
5 Sobic.010G121700 plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.002G097300 OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed -
7 Sobic.002G156400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@MDR-like ABC transporter, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
8 Sobic.008G024200 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
9 Sobic.001G143700 cupin domain containing protein, expressed -
10 Sobic.009G047100 GEX1, putative, expressed -
11 Sobic.005G148000 - -
12 Sobic.005G140900 OsFBX230 - F-box domain containing protein, expressed -
13 Sobic.008G036100 expressed protein -
14 Sobic.005G040100 expressed protein -
15 Sobic.001G167300 - -
16 Sobic.005G156300 - -
17 Sobic.007G122600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
18 Sobic.005G006100 hypothetical protein -
19 Sobic.006G042600 - -
20 Sobic.003G004000 - -


Gene co-expression network
sample Sobic001G089300 Sobic001G089300 Sobic005G189100 Sobic005G189100 Sobic001G089300--Sobic005G189100 Sobic009G234900 Sobic009G234900 Sobic001G089300--Sobic009G234900 Sobic002G006200 Sobic002G006200 Sobic001G089300--Sobic002G006200 Sobic008G138400 Sobic008G138400 Sobic001G089300--Sobic008G138400 Sobic010G121700 Sobic010G121700 Sobic001G089300--Sobic010G121700 Sobic002G097300 Sobic002G097300 Sobic001G089300--Sobic002G097300 Sobic002G156400 Sobic002G156400 Sobic001G089300--Sobic002G156400 Sobic008G024200 Sobic008G024200 Sobic001G089300--Sobic008G024200 Sobic001G143700 Sobic001G143700 Sobic001G089300--Sobic001G143700 Sobic005G189100--Sobic002G006200 Sobic005G189100--Sobic001G089300 Sobic005G189100--Sobic009G234900 Sobic005G189100--Sobic008G138400 Sobic005G189100--Sobic001G143700 Sobic005G189100--Sobic002G097300 Sobic005G189100--Sobic010G121700 Sobic005G189100--Sobic008G024200 Sobic005G189100--Sobic002G156400 Sobic009G234900--Sobic005G189100 Sobic009G234900--Sobic010G121700 Sobic009G234900--Sobic001G089300 Sobic009G234900--Sobic008G024200 Sobic009G234900--Sobic002G006200 Sobic009G047100 Sobic009G047100 Sobic009G234900--Sobic009G047100 Sobic009G234900--Sobic008G138400 Sobic009G234900--Sobic002G156400 Sobic009G234900--Sobic001G143700 Sobic002G006200--Sobic005G189100 Sobic002G006200--Sobic001G143700 Sobic002G006200--Sobic002G097300 Sobic002G006200--Sobic008G138400 Sobic002G006200--Sobic001G089300 Sobic005G148000 Sobic005G148000 Sobic002G006200--Sobic005G148000 Sobic002G006200--Sobic009G234900 Sobic002G006200--Sobic008G024200 Sobic002G006200--Sobic009G047100 Sobic008G138400--Sobic002G097300 Sobic008G138400--Sobic002G156400 Sobic005G140900 Sobic005G140900 Sobic008G138400--Sobic005G140900 Sobic008G138400--Sobic005G189100 Sobic008G138400--Sobic002G006200 Sobic008G138400--Sobic001G089300 Sobic008G138400--Sobic001G143700 Sobic008G138400--Sobic009G234900 Sobic008G138400--Sobic005G148000 Sobic010G121700--Sobic009G234900 Sobic010G121700--Sobic005G189100 Sobic010G121700--Sobic008G024200 Sobic010G121700--Sobic001G089300 Sobic010G121700--Sobic009G047100 Sobic010G121700--Sobic002G006200 Sobic010G121700--Sobic002G156400 Sobic010G121700--Sobic008G138400 Sobic010G121700--Sobic002G097300 Sobic002G097300--Sobic008G138400 Sobic002G097300--Sobic002G006200 Sobic002G097300--Sobic001G143700 Sobic002G097300--Sobic005G140900 Sobic002G097300--Sobic005G189100 Sobic002G097300--Sobic002G156400 Sobic002G097300--Sobic005G148000 Sobic002G097300--Sobic001G089300 Sobic008G036100 Sobic008G036100 Sobic002G097300--Sobic008G036100 Sobic002G156400--Sobic008G138400 Sobic002G156400--Sobic005G140900 Sobic002G156400--Sobic002G097300 Sobic002G156400--Sobic005G189100 Sobic002G156400--Sobic001G089300 Sobic002G156400--Sobic009G234900 Sobic002G156400--Sobic002G006200 Sobic002G156400--Sobic010G121700 Sobic002G156400--Sobic008G036100 Sobic008G024200--Sobic009G047100 Sobic008G024200--Sobic009G234900 Sobic008G024200--Sobic010G121700 Sobic008G024200--Sobic005G189100 Sobic008G024200--Sobic002G006200 Sobic008G024200--Sobic001G089300 Sobic008G024200--Sobic001G143700 Sobic001G167300 Sobic001G167300 Sobic008G024200--Sobic001G167300 Sobic008G024200--Sobic008G138400 Sobic001G143700--Sobic005G148000 Sobic001G143700--Sobic002G006200 Sobic001G143700--Sobic005G189100 Sobic001G143700--Sobic002G097300 Sobic005G040100 Sobic005G040100 Sobic001G143700--Sobic005G040100 Sobic001G143700--Sobic008G138400 Sobic001G143700--Sobic001G089300 Sobic001G143700--Sobic009G234900 Sobic007G122600 Sobic007G122600 Sobic001G143700--Sobic007G122600
Octagon: transcription factors


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