Gene annotation
Transcriptome id Sobic.002G156400.1
Synonym Sb02g019540, P-glycoprotein, SbPGP2, PGP21
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments" (PubMedID : 20528920)
MDR-like ABC transporter, putative, expressed
UniProt A0A1B6QBN8
Pfam PF00005 PF00664
Panther DB PTHR24221 PTHR24221:SF239
NCBI CDD -
KEGG Orthology K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT2G47000 : ATP binding cassette subfamily B4
RAP-DB (Rice) LOC_Os01g35030.1 : MDR-like ABC transporter, putative, expressed
MaizeGDB (Corn) Zm00025a049436 , Zm00025a013659 , Zm00025a028841
Brachypodium PNT70939 , KQK05464 , KQK05465 , KQK05466 , KQK05463
Barley -
Wheat TraesCS3B02G401600 , TraesCS3B02G401600 , TraesCS3B02G401600 , TraesCS5A02G495900 , TraesCS3D02G362700 , TraesCS3A02G369700 , TraesCS3A02G369700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G138400 expressed protein -
2 Sobic.005G140900 OsFBX230 - F-box domain containing protein, expressed -
3 Sobic.002G097300 OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed -
4 Sobic.005G189100 transcription factor Dp, putative, expressed -
5 Sobic.001G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
6 Sobic.009G234900 WRKY43, expressed -
7 Sobic.002G006200 - -
8 Sobic.010G121700 plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.008G036100 expressed protein -
10 Sobic.001G143700 cupin domain containing protein, expressed -
11 Sobic.009G047100 GEX1, putative, expressed -
12 Sobic.008G024200 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
13 Sobic.005G148000 - -
14 Sobic.006G017700 expressed protein -
15 Sobic.005G000900 OsFBX103 - F-box domain containing protein, expressed -
16 Sobic.005G156300 - -
17 Sobic.002G182701 - -
18 Sobic.001G117100 - -
19 Sobic.005G040100 expressed protein -
20 Sobic.009G182100 cysteine proteinase inhibitor precursor protein, putative, expressed -


Gene co-expression network
sample Sobic002G156400 Sobic002G156400 Sobic008G138400 Sobic008G138400 Sobic002G156400--Sobic008G138400 Sobic005G140900 Sobic005G140900 Sobic002G156400--Sobic005G140900 Sobic002G097300 Sobic002G097300 Sobic002G156400--Sobic002G097300 Sobic005G189100 Sobic005G189100 Sobic002G156400--Sobic005G189100 Sobic001G089300 Sobic001G089300 Sobic002G156400--Sobic001G089300 Sobic009G234900 Sobic009G234900 Sobic002G156400--Sobic009G234900 Sobic002G006200 Sobic002G006200 Sobic002G156400--Sobic002G006200 Sobic010G121700 Sobic010G121700 Sobic002G156400--Sobic010G121700 Sobic008G036100 Sobic008G036100 Sobic002G156400--Sobic008G036100 Sobic008G138400--Sobic002G097300 Sobic008G138400--Sobic002G156400 Sobic008G138400--Sobic005G140900 Sobic008G138400--Sobic005G189100 Sobic008G138400--Sobic002G006200 Sobic008G138400--Sobic001G089300 Sobic001G143700 Sobic001G143700 Sobic008G138400--Sobic001G143700 Sobic008G138400--Sobic009G234900 Sobic005G148000 Sobic005G148000 Sobic008G138400--Sobic005G148000 Sobic005G140900--Sobic008G138400 Sobic005G140900--Sobic002G156400 Sobic005G140900--Sobic002G097300 Sobic005G140900--Sobic008G036100 Sobic005G140900--Sobic005G189100 Sobic005G140900--Sobic002G006200 Sobic005G140900--Sobic001G089300 Sobic005G140900--Sobic001G143700 Sobic005G140900--Sobic009G234900 Sobic002G097300--Sobic008G138400 Sobic002G097300--Sobic002G006200 Sobic002G097300--Sobic001G143700 Sobic002G097300--Sobic005G140900 Sobic002G097300--Sobic005G189100 Sobic002G097300--Sobic002G156400 Sobic002G097300--Sobic005G148000 Sobic002G097300--Sobic001G089300 Sobic002G097300--Sobic008G036100 Sobic005G189100--Sobic002G006200 Sobic005G189100--Sobic001G089300 Sobic005G189100--Sobic009G234900 Sobic005G189100--Sobic008G138400 Sobic005G189100--Sobic001G143700 Sobic005G189100--Sobic002G097300 Sobic005G189100--Sobic010G121700 Sobic008G024200 Sobic008G024200 Sobic005G189100--Sobic008G024200 Sobic005G189100--Sobic002G156400 Sobic001G089300--Sobic005G189100 Sobic001G089300--Sobic009G234900 Sobic001G089300--Sobic002G006200 Sobic001G089300--Sobic008G138400 Sobic001G089300--Sobic010G121700 Sobic001G089300--Sobic002G097300 Sobic001G089300--Sobic002G156400 Sobic001G089300--Sobic008G024200 Sobic001G089300--Sobic001G143700 Sobic009G234900--Sobic005G189100 Sobic009G234900--Sobic010G121700 Sobic009G234900--Sobic001G089300 Sobic009G234900--Sobic008G024200 Sobic009G234900--Sobic002G006200 Sobic009G047100 Sobic009G047100 Sobic009G234900--Sobic009G047100 Sobic009G234900--Sobic008G138400 Sobic009G234900--Sobic002G156400 Sobic009G234900--Sobic001G143700 Sobic002G006200--Sobic005G189100 Sobic002G006200--Sobic001G143700 Sobic002G006200--Sobic002G097300 Sobic002G006200--Sobic008G138400 Sobic002G006200--Sobic001G089300 Sobic002G006200--Sobic005G148000 Sobic002G006200--Sobic009G234900 Sobic002G006200--Sobic008G024200 Sobic002G006200--Sobic009G047100 Sobic010G121700--Sobic009G234900 Sobic010G121700--Sobic005G189100 Sobic010G121700--Sobic008G024200 Sobic010G121700--Sobic001G089300 Sobic010G121700--Sobic009G047100 Sobic010G121700--Sobic002G006200 Sobic010G121700--Sobic002G156400 Sobic010G121700--Sobic008G138400 Sobic010G121700--Sobic002G097300 Sobic008G036100--Sobic005G140900 Sobic008G036100--Sobic008G138400 Sobic008G036100--Sobic002G097300 Sobic008G036100--Sobic002G156400 Sobic008G036100--Sobic002G006200 Sobic008G036100--Sobic001G143700 Sobic008G036100--Sobic005G189100 Sobic008G036100--Sobic005G148000 Sobic008G036100--Sobic001G089300
Octagon: transcription factors


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