Gene annotation
Transcriptome id Sobic.001G143700.1
Synonym Sb01g012530
Functional annotation cupin domain containing protein, expressed
UniProt C5WQC0
Pfam PF00190
Panther DB PTHR31189 PTHR31189:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07750 : RmlC-like cupins superfamily protein
RAP-DB (Rice) LOC_Os01g74480.1 : cupin domain containing protein, expressed
MaizeGDB (Corn) Zm00025a040845 , Zm00025a053214 , Zm00025a038239 , Zm00025a024834
Brachypodium KQK11820 , KQK07756
Barley HORVU3Hr1G116010.2 , HORVU3Hr1G114900.1 , HORVU1Hr1G008130.1 , HORVU7Hr1G119320.1 , HORVU7Hr1G119320.4
Wheat TraesCS3A02G526500 , TraesCS7A02G545600 , TraesCS3B02G601300 , TraesCS1B02G059000 , TraesCS3D02G536500 , TraesCS7B02G468800 , TraesCS1A02G045800 , TraesCS1D02G046400 , TraesCS1A02G369500 , TraesCS3D02G531600 , TraesCS3A02G531100 , TraesCS3A02G531000 , TraesCS1D02G375400 , TraesCS7D02G531900 , TraesCS7A02G545400 , TraesCS3B02G593800 , TraesCS3B02G601500
Populus -


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cDNA sequences
Sobic.001G143700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G148000 - -
2 Sobic.002G006200 - -
3 Sobic.005G189100 transcription factor Dp, putative, expressed -
4 Sobic.002G097300 OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed -
5 Sobic.005G040100 expressed protein -
6 Sobic.008G138400 expressed protein -
7 Sobic.001G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
8 Sobic.009G234900 WRKY43, expressed -
9 Sobic.007G122600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
10 Sobic.008G024200 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
11 Sobic.005G140900 OsFBX230 - F-box domain containing protein, expressed -
12 Sobic.002G156400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@MDR-like ABC transporter, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
13 Sobic.007G134501 - -
14 Sobic.009G047100 GEX1, putative, expressed -
15 Sobic.005G156300 - -
16 Sobic.002G194201 - -
17 Sobic.008G036100 expressed protein -
18 Sobic.005G006100 hypothetical protein -
19 Sobic.010G121700 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.006G042600 - -


Gene co-expression network
sample Sobic001G143700 Sobic001G143700 Sobic005G148000 Sobic005G148000 Sobic001G143700--Sobic005G148000 Sobic002G006200 Sobic002G006200 Sobic001G143700--Sobic002G006200 Sobic005G189100 Sobic005G189100 Sobic001G143700--Sobic005G189100 Sobic002G097300 Sobic002G097300 Sobic001G143700--Sobic002G097300 Sobic005G040100 Sobic005G040100 Sobic001G143700--Sobic005G040100 Sobic008G138400 Sobic008G138400 Sobic001G143700--Sobic008G138400 Sobic001G089300 Sobic001G089300 Sobic001G143700--Sobic001G089300 Sobic009G234900 Sobic009G234900 Sobic001G143700--Sobic009G234900 Sobic007G122600 Sobic007G122600 Sobic001G143700--Sobic007G122600 Sobic005G148000--Sobic001G143700 Sobic005G148000--Sobic005G040100 Sobic005G148000--Sobic002G006200 Sobic005G148000--Sobic002G097300 Sobic005G148000--Sobic005G189100 Sobic007G134501 Sobic007G134501 Sobic005G148000--Sobic007G134501 Sobic005G148000--Sobic007G122600 Sobic005G148000--Sobic008G138400 Sobic002G194201 Sobic002G194201 Sobic005G148000--Sobic002G194201 Sobic002G006200--Sobic005G189100 Sobic002G006200--Sobic001G143700 Sobic002G006200--Sobic002G097300 Sobic002G006200--Sobic008G138400 Sobic002G006200--Sobic001G089300 Sobic002G006200--Sobic005G148000 Sobic002G006200--Sobic009G234900 Sobic008G024200 Sobic008G024200 Sobic002G006200--Sobic008G024200 Sobic009G047100 Sobic009G047100 Sobic002G006200--Sobic009G047100 Sobic005G189100--Sobic002G006200 Sobic005G189100--Sobic001G089300 Sobic005G189100--Sobic009G234900 Sobic005G189100--Sobic008G138400 Sobic005G189100--Sobic001G143700 Sobic005G189100--Sobic002G097300 Sobic010G121700 Sobic010G121700 Sobic005G189100--Sobic010G121700 Sobic005G189100--Sobic008G024200 Sobic002G156400 Sobic002G156400 Sobic005G189100--Sobic002G156400 Sobic002G097300--Sobic008G138400 Sobic002G097300--Sobic002G006200 Sobic002G097300--Sobic001G143700 Sobic005G140900 Sobic005G140900 Sobic002G097300--Sobic005G140900 Sobic002G097300--Sobic005G189100 Sobic002G097300--Sobic002G156400 Sobic002G097300--Sobic005G148000 Sobic002G097300--Sobic001G089300 Sobic008G036100 Sobic008G036100 Sobic002G097300--Sobic008G036100 Sobic005G040100--Sobic005G148000 Sobic005G040100--Sobic007G134501 Sobic005G040100--Sobic002G194201 Sobic005G040100--Sobic007G122600 Sobic005G040100--Sobic001G143700 Sobic003G007650 Sobic003G007650 Sobic005G040100--Sobic003G007650 Sobic005G006100 Sobic005G006100 Sobic005G040100--Sobic005G006100 Sobic005G040100--Sobic002G006200 Sobic003G245300 Sobic003G245300 Sobic005G040100--Sobic003G245300 Sobic008G138400--Sobic002G097300 Sobic008G138400--Sobic002G156400 Sobic008G138400--Sobic005G140900 Sobic008G138400--Sobic005G189100 Sobic008G138400--Sobic002G006200 Sobic008G138400--Sobic001G089300 Sobic008G138400--Sobic001G143700 Sobic008G138400--Sobic009G234900 Sobic008G138400--Sobic005G148000 Sobic001G089300--Sobic005G189100 Sobic001G089300--Sobic009G234900 Sobic001G089300--Sobic002G006200 Sobic001G089300--Sobic008G138400 Sobic001G089300--Sobic010G121700 Sobic001G089300--Sobic002G097300 Sobic001G089300--Sobic002G156400 Sobic001G089300--Sobic008G024200 Sobic001G089300--Sobic001G143700 Sobic009G234900--Sobic005G189100 Sobic009G234900--Sobic010G121700 Sobic009G234900--Sobic001G089300 Sobic009G234900--Sobic008G024200 Sobic009G234900--Sobic002G006200 Sobic009G234900--Sobic009G047100 Sobic009G234900--Sobic008G138400 Sobic009G234900--Sobic002G156400 Sobic009G234900--Sobic001G143700 Sobic007G122600--Sobic005G006100 Sobic007G122600--Sobic002G194201 Sobic007G122600--Sobic007G134501 Sobic007G122600--Sobic005G040100 Sobic007G122600--Sobic003G007650 Sobic007G122600--Sobic003G245300 Sobic005G006400 Sobic005G006400 Sobic007G122600--Sobic005G006400 Sobic010G240300 Sobic010G240300 Sobic007G122600--Sobic010G240300 Sobic007G035200 Sobic007G035200 Sobic007G122600--Sobic007G035200
Octagon: transcription factors


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