Gene annotation
Transcriptome id Sobic.004G273600.2,Sobic.004G273600.1
Synonym Sb04g031100
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1Z5RPA2 , A0A1Z5RQ49
Pfam PF00076
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G17720 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g53330.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017889 , Zm00025a032385
Brachypodium KQK00860
Barley HORVU6Hr1G067430.10 , HORVU6Hr1G067430.1 , HORVU6Hr1G067430.4 , HORVU6Hr1G067430.5 , HORVU6Hr1G067430.8 , HORVU6Hr1G067430.9
Wheat TraesCS6D02G249000 , TraesCS6A02G265600 , TraesCS6B02G292900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G001200 CCT/B-box zinc finger protein, putative, expressed -
2 Sobic.002G125100 - -
3 Sobic.002G279900 beta-galactosidase precursor, putative, expressed -
4 Sobic.005G145400 RNA recognition motif containing protein, putative, expressed -
5 Sobic.001G135950 - -
6 Sobic.004G099200 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
7 Sobic.009G105100 expressed protein -
8 Sobic.002G254700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
9 Sobic.004G071900 expressed protein -
10 Sobic.003G420500 Ca ATPase 3(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
11 Sobic.005G037700 OsFBX378 - F-box domain containing protein, expressed -
12 Sobic.001G525600 fringe-related protein, putative, expressed -
13 Sobic.008G043200 - -
14 Sobic.009G175400 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
15 Sobic.006G215500 OsFBX114 - F-box domain containing protein, expressed -
16 Sobic.010G276100 transporter family protein, putative, expressed -
17 Sobic.004G295050 - -
18 Sobic.006G205400 villin protein, putative, expressed -
19 Sobic.002G295800 STRUBBELIG-RECEPTOR FAMILY 5 precursor, putative, expressed -
20 Sobic.007G197000 "Candidate orthologue to the wheat Pm40 gene, probable glucan endo-1,3-betaglucosidase A6"(PubMedID : 27755575)@glucan endo-1,3-beta-glucosidase precursor, putative, expressed -


Gene co-expression network
sample Sobic004G273600 Sobic004G273600 Sobic010G001200 Sobic010G001200 Sobic004G273600--Sobic010G001200 Sobic002G125100 Sobic002G125100 Sobic004G273600--Sobic002G125100 Sobic002G279900 Sobic002G279900 Sobic004G273600--Sobic002G279900 Sobic005G145400 Sobic005G145400 Sobic004G273600--Sobic005G145400 Sobic001G135950 Sobic001G135950 Sobic004G273600--Sobic001G135950 Sobic004G099200 Sobic004G099200 Sobic004G273600--Sobic004G099200 Sobic009G105100 Sobic009G105100 Sobic004G273600--Sobic009G105100 Sobic002G254700 Sobic002G254700 Sobic004G273600--Sobic002G254700 Sobic004G071900 Sobic004G071900 Sobic004G273600--Sobic004G071900 Sobic010G001200--Sobic001G135950 Sobic010G001200--Sobic002G279900 Sobic010G001200--Sobic004G099200 Sobic010G001200--Sobic004G071900 Sobic010G001200--Sobic002G125100 Sobic001G525600 Sobic001G525600 Sobic010G001200--Sobic001G525600 Sobic010G001200--Sobic005G145400 Sobic006G215500 Sobic006G215500 Sobic010G001200--Sobic006G215500 Sobic003G420500 Sobic003G420500 Sobic010G001200--Sobic003G420500 Sobic002G125100--Sobic001G135950 Sobic002G125100--Sobic004G071900 Sobic002G125100--Sobic006G215500 Sobic002G125100--Sobic004G099200 Sobic002G125100--Sobic002G279900 Sobic002G125100--Sobic009G105100 Sobic002G125100--Sobic010G001200 Sobic002G125100--Sobic001G525600 Sobic003G313200 Sobic003G313200 Sobic002G125100--Sobic003G313200 Sobic002G279900--Sobic001G135950 Sobic002G279900--Sobic002G125100 Sobic002G279900--Sobic004G071900 Sobic002G279900--Sobic006G215500 Sobic002G279900--Sobic010G001200 Sobic002G279900--Sobic004G099200 Sobic002G279900--Sobic001G525600 Sobic002G279900--Sobic003G313200 Sobic006G022700 Sobic006G022700 Sobic002G279900--Sobic006G022700 Sobic005G145400--Sobic003G420500 Sobic008G043200 Sobic008G043200 Sobic005G145400--Sobic008G043200 Sobic009G175400 Sobic009G175400 Sobic005G145400--Sobic009G175400 Sobic010G276100 Sobic010G276100 Sobic005G145400--Sobic010G276100 Sobic005G145400--Sobic004G099200 Sobic005G145400--Sobic001G135950 Sobic005G037700 Sobic005G037700 Sobic005G145400--Sobic005G037700 Sobic010G040400 Sobic010G040400 Sobic005G145400--Sobic010G040400 Sobic005G145400--Sobic001G525600 Sobic001G135950--Sobic004G071900 Sobic001G135950--Sobic002G125100 Sobic001G135950--Sobic006G215500 Sobic001G135950--Sobic004G099200 Sobic001G135950--Sobic002G279900 Sobic001G135950--Sobic010G001200 Sobic001G135950--Sobic001G525600 Sobic001G135950--Sobic005G145400 Sobic001G135950--Sobic003G313200 Sobic004G099200--Sobic001G135950 Sobic004G099200--Sobic001G525600 Sobic004G099200--Sobic004G071900 Sobic004G099200--Sobic005G145400 Sobic004G099200--Sobic002G125100 Sobic004G099200--Sobic006G215500 Sobic004G099200--Sobic003G313200 Sobic004G099200--Sobic010G276100 Sobic004G099200--Sobic002G279900 Sobic010G252600 Sobic010G252600 Sobic009G105100--Sobic010G252600 Sobic009G105100--Sobic004G071900 Sobic009G102700 Sobic009G102700 Sobic009G105100--Sobic009G102700 Sobic004G166100 Sobic004G166100 Sobic009G105100--Sobic004G166100 Sobic009G105100--Sobic006G215500 Sobic004G025500 Sobic004G025500 Sobic009G105100--Sobic004G025500 Sobic009G105100--Sobic002G125100 Sobic009G105100--Sobic001G135950 Sobic007G057600 Sobic007G057600 Sobic009G105100--Sobic007G057600 Sobic002G254700--Sobic009G175400 Sobic009G082900 Sobic009G082900 Sobic002G254700--Sobic009G082900 Sobic002G254700--Sobic010G276100 Sobic010G144700 Sobic010G144700 Sobic002G254700--Sobic010G144700 Sobic001G252900 Sobic001G252900 Sobic002G254700--Sobic001G252900 Sobic004G002800 Sobic004G002800 Sobic002G254700--Sobic004G002800 Sobic003G073540 Sobic003G073540 Sobic002G254700--Sobic003G073540 Sobic002G254700--Sobic010G252600 Sobic001G528700 Sobic001G528700 Sobic002G254700--Sobic001G528700 Sobic004G071900--Sobic006G215500 Sobic004G071900--Sobic001G135950 Sobic004G071900--Sobic002G125100 Sobic004G071900--Sobic004G099200 Sobic004G071900--Sobic009G105100 Sobic004G071900--Sobic009G102700 Sobic004G071900--Sobic003G313200 Sobic004G071900--Sobic006G022700 Sobic004G071900--Sobic002G279900
Octagon: transcription factors


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