Gene annotation
Transcriptome id Sobic.002G418300.1
Synonym 1, GFS1, VSR1, BP80B, ATVSR1, Sb02g043010, BP-80, ATELP1, ATELP, BP80-1, BP80
Functional annotation vacuolar-sorting receptor precursor, putative, expressed
UniProt C5X5M2
Pfam PF02225
Panther DB PTHR22765 PTHR22765:SF57
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52850 : vacuolar sorting receptor homolog 1
RAP-DB (Rice) LOC_Os07g48229.1 : vacuolar-sorting receptor precursor, putative, expressed
MaizeGDB (Corn) Zm00025a002348 , Zm00025a049161 , Zm00025a052424
Brachypodium KQJ96547 , KQK14626
Barley HORVU2Hr1G017770.2 , HORVU2Hr1G017770.3 , HORVU2Hr1G017770.1 , HORVU2Hr1G017770.6 , HORVU2Hr1G017770.7 , HORVU2Hr1G017770.4 , HORVU2Hr1G017770.5 , HORVU2Hr1G017770.8 , HORVU2Hr1G017770.9 , HORVU4Hr1G022950.10 , HORVU4Hr1G022950.11 , HORVU4Hr1G050280.1 , HORVU4Hr1G050280.3 , HORVU4Hr1G050280.2 , HORVU4Hr1G050280.5 , HORVU4Hr1G050280.4 , HORVU4Hr1G050280.7 , HORVU4Hr1G050280.6 , HORVU4Hr1G050280.9 , HORVU4Hr1G050280.8 , HORVU2Hr1G017770.11 , HORVU2Hr1G017770.16 , HORVU4Hr1G050280.10 , HORVU2Hr1G017770.10 , HORVU2Hr1G017770.12 , HORVU2Hr1G017770.13 , HORVU2Hr1G017770.14 , HORVU2Hr1G017770.15 , HORVU2Hr1G017770.17 , HORVU2Hr1G017770.18 , HORVU2Hr1G017770.19 , HORVU4Hr1G022950.1 , HORVU4Hr1G022950.2 , HORVU4Hr1G022950.4 , HORVU4Hr1G022950.5
Wheat TraesCS2D02G105100 , TraesCS4A02G193900 , TraesCS4B02G121300 , TraesCS4B02G121300 , TraesCS2D02G423700 , TraesCS4B02G170000 , TraesCS4B02G170000 , TraesCS4B02G170000 , TraesCS4D02G119400 , TraesCS2A02G105500 , TraesCS4A02G135100 , TraesCS4A02G135100 , TraesCS4A02G135100 , TraesCS2B02G122400 , TraesCS2A02G425800 , TraesCS2A02G425800 , TraesCS4D02G172100 , TraesCS4D02G172100
Populus -


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cDNA sequences
Sobic.002G418300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G417700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
2 Sobic.007G094700 - -
3 Sobic.003G133600 major facilitator superfamily antiporter, putative, expressed -
4 Sobic.004G203150 - -
5 Sobic.001G029300 anthranilate synthase component I-1, chloroplast precursor, putative, expressed K01657: anthranilate synthase component I
6 Sobic.002G101600 - -
7 Sobic.004G328200 - -
8 Sobic.002G189500 expressed protein -
9 Sobic.008G155700 ankyrin repeat domain-containing protein 44, putative, expressed -
10 Sobic.010G242600 OsFBDUF52 - F-box and DUF domain containing protein, expressed -
11 Sobic.006G266400 B3 DNA binding domain containing protein, expressed -
12 Sobic.007G219601 - -
13 Sobic.008G056600 OsFBX237 - F-box domain containing protein, expressed -
14 Sobic.007G128000 cytochrome P450, putative, expressed -
15 Sobic.009G145000 early-responsive to dehydration protein-related, putative, expressed -
16 Sobic.001G240600 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
17 Sobic.001G163666 - -
18 Sobic.002G190750 - -
19 Sobic.009G207700 cell cycle control protein, putative, expressed -
20 Sobic.001G068066 - -


Gene co-expression network
sample Sobic002G418300 Sobic002G418300 Sobic001G417700 Sobic001G417700 Sobic002G418300--Sobic001G417700 Sobic007G094700 Sobic007G094700 Sobic002G418300--Sobic007G094700 Sobic003G133600 Sobic003G133600 Sobic002G418300--Sobic003G133600 Sobic004G203150 Sobic004G203150 Sobic002G418300--Sobic004G203150 Sobic001G029300 Sobic001G029300 Sobic002G418300--Sobic001G029300 Sobic002G101600 Sobic002G101600 Sobic002G418300--Sobic002G101600 Sobic004G328200 Sobic004G328200 Sobic002G418300--Sobic004G328200 Sobic002G189500 Sobic002G189500 Sobic002G418300--Sobic002G189500 Sobic008G155700 Sobic008G155700 Sobic002G418300--Sobic008G155700 Sobic007G128000 Sobic007G128000 Sobic001G417700--Sobic007G128000 Sobic001G417700--Sobic002G418300 Sobic001G417700--Sobic007G094700 Sobic009G145000 Sobic009G145000 Sobic001G417700--Sobic009G145000 Sobic001G417700--Sobic002G101600 Sobic006G266400 Sobic006G266400 Sobic001G417700--Sobic006G266400 Sobic001G136000 Sobic001G136000 Sobic001G417700--Sobic001G136000 Sobic001G417700--Sobic002G189500 Sobic001G240600 Sobic001G240600 Sobic001G417700--Sobic001G240600 Sobic007G094700--Sobic004G203150 Sobic007G219601 Sobic007G219601 Sobic007G094700--Sobic007G219601 Sobic007G094700--Sobic003G133600 Sobic007G094700--Sobic002G418300 Sobic007G094700--Sobic001G417700 Sobic007G094700--Sobic004G328200 Sobic007G094700--Sobic008G155700 Sobic009G008000 Sobic009G008000 Sobic007G094700--Sobic009G008000 Sobic007G094700--Sobic001G029300 Sobic003G133600--Sobic007G094700 Sobic003G133600--Sobic004G203150 Sobic003G133600--Sobic007G219601 Sobic001G068066 Sobic001G068066 Sobic003G133600--Sobic001G068066 Sobic003G133600--Sobic004G328200 Sobic003G133600--Sobic002G418300 Sobic003G133600--Sobic001G029300 Sobic006G064450 Sobic006G064450 Sobic003G133600--Sobic006G064450 Sobic005G078000 Sobic005G078000 Sobic003G133600--Sobic005G078000 Sobic004G203150--Sobic007G094700 Sobic004G203150--Sobic007G219601 Sobic004G203150--Sobic003G133600 Sobic004G203150--Sobic002G418300 Sobic004G203150--Sobic001G029300 Sobic004G203150--Sobic004G328200 Sobic004G203150--Sobic001G417700 Sobic004G203150--Sobic009G008000 Sobic004G203150--Sobic008G155700 Sobic001G163666 Sobic001G163666 Sobic001G029300--Sobic001G163666 Sobic001G029300--Sobic002G189500 Sobic010G242600 Sobic010G242600 Sobic001G029300--Sobic010G242600 Sobic001G029300--Sobic006G266400 Sobic009G207700 Sobic009G207700 Sobic001G029300--Sobic009G207700 Sobic001G029300--Sobic002G101600 Sobic006G236400 Sobic006G236400 Sobic001G029300--Sobic006G236400 Sobic010G177200 Sobic010G177200 Sobic001G029300--Sobic010G177200 Sobic001G029300--Sobic004G328200 Sobic002G101600--Sobic006G266400 Sobic009G250300 Sobic009G250300 Sobic002G101600--Sobic009G250300 Sobic002G015900 Sobic002G015900 Sobic002G101600--Sobic002G015900 Sobic002G101600--Sobic004G328200 Sobic002G101600--Sobic001G029300 Sobic004G054900 Sobic004G054900 Sobic002G101600--Sobic004G054900 Sobic002G101600--Sobic010G177200 Sobic001G337100 Sobic001G337100 Sobic002G101600--Sobic001G337100 Sobic002G101600--Sobic001G163666 Sobic004G328200--Sobic002G101600 Sobic004G328200--Sobic001G029300 Sobic004G328200--Sobic001G163666 Sobic004G328200--Sobic003G133600 Sobic004G328200--Sobic006G266400 Sobic004G328200--Sobic002G189500 Sobic004G328200--Sobic001G068066 Sobic004G328200--Sobic010G242600 Sobic004G328200--Sobic009G207700 Sobic004G190400 Sobic004G190400 Sobic002G189500--Sobic004G190400 Sobic002G189500--Sobic006G266400 Sobic002G189500--Sobic001G029300 Sobic002G189500--Sobic010G242600 Sobic002G189500--Sobic001G163666 Sobic002G189500--Sobic002G101600 Sobic002G189500--Sobic009G145000 Sobic002G189500--Sobic001G240600 Sobic002G189500--Sobic010G177200 Sobic008G155700--Sobic007G094700 Sobic008G155700--Sobic001G417700 Sobic008G155700--Sobic002G418300 Sobic008G155700--Sobic004G203150 Sobic009G048700 Sobic009G048700 Sobic008G155700--Sobic009G048700 Sobic008G155700--Sobic007G219601 Sobic008G155700--Sobic003G133600 Sobic008G155700--Sobic009G008000 Sobic008G155700--Sobic009G145000
Octagon: transcription factors


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