Gene annotation
Transcriptome id Sobic.001G417700.1
Synonym Sb01g039310, PAB7
Functional annotation polyadenylate-binding protein, putative, expressed
UniProt A0A1B6QQF6
Pfam PF00658 PF00076
Panther DB PTHR24012 PTHR24012:SF455
NCBI CDD KOG0123; Polyadenylate-binding protein (RRM superfamily)
KEGG Orthology K13126; polyadenylate-binding protein
Gene Ontology GO:0003723; RNA binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G36660 : poly(A) binding protein 7
RAP-DB (Rice) LOC_Os03g17030.1 : polyadenylate-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a052739
Brachypodium PNT77660 , PNT77661
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G417700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G128000 cytochrome P450, putative, expressed -
2 Sobic.002G418300 vacuolar-sorting receptor precursor, putative, expressed -
3 Sobic.007G094700 - -
4 Sobic.009G145000 early-responsive to dehydration protein-related, putative, expressed -
5 Sobic.002G101600 - -
6 Sobic.006G266400 B3 DNA binding domain containing protein, expressed -
7 Sobic.001G136000 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
8 Sobic.002G189500 expressed protein -
9 Sobic.001G240600 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
10 Sobic.001G029300 anthranilate synthase component I-1, chloroplast precursor, putative, expressed K01657: anthranilate synthase component I
11 Sobic.003G133600 major facilitator superfamily antiporter, putative, expressed -
12 Sobic.008G155700 ankyrin repeat domain-containing protein 44, putative, expressed -
13 Sobic.004G328200 - -
14 Sobic.009G048700 expressed protein -
15 Sobic.010G242600 OsFBDUF52 - F-box and DUF domain containing protein, expressed -
16 Sobic.004G203150 - -
17 Sobic.009G008000 transcription factor Dp, putative, expressed -
18 Sobic.008G056600 OsFBX237 - F-box domain containing protein, expressed -
19 Sobic.007G219601 - -
20 Sobic.001G163666 - -


Gene co-expression network
sample Sobic001G417700 Sobic001G417700 Sobic007G128000 Sobic007G128000 Sobic001G417700--Sobic007G128000 Sobic002G418300 Sobic002G418300 Sobic001G417700--Sobic002G418300 Sobic007G094700 Sobic007G094700 Sobic001G417700--Sobic007G094700 Sobic009G145000 Sobic009G145000 Sobic001G417700--Sobic009G145000 Sobic002G101600 Sobic002G101600 Sobic001G417700--Sobic002G101600 Sobic006G266400 Sobic006G266400 Sobic001G417700--Sobic006G266400 Sobic001G136000 Sobic001G136000 Sobic001G417700--Sobic001G136000 Sobic002G189500 Sobic002G189500 Sobic001G417700--Sobic002G189500 Sobic001G240600 Sobic001G240600 Sobic001G417700--Sobic001G240600 Sobic007G128000--Sobic001G136000 Sobic007G128000--Sobic001G417700 Sobic007G128000--Sobic001G240600 Sobic007G128000--Sobic006G266400 Sobic007G128000--Sobic002G101600 Sobic003G070400 Sobic003G070400 Sobic007G128000--Sobic003G070400 Sobic009G250300 Sobic009G250300 Sobic007G128000--Sobic009G250300 Sobic007G081100 Sobic007G081100 Sobic007G128000--Sobic007G081100 Sobic007G128000--Sobic002G189500 Sobic002G418300--Sobic001G417700 Sobic002G418300--Sobic007G094700 Sobic003G133600 Sobic003G133600 Sobic002G418300--Sobic003G133600 Sobic004G203150 Sobic004G203150 Sobic002G418300--Sobic004G203150 Sobic001G029300 Sobic001G029300 Sobic002G418300--Sobic001G029300 Sobic002G418300--Sobic002G101600 Sobic004G328200 Sobic004G328200 Sobic002G418300--Sobic004G328200 Sobic002G418300--Sobic002G189500 Sobic008G155700 Sobic008G155700 Sobic002G418300--Sobic008G155700 Sobic007G094700--Sobic004G203150 Sobic007G219601 Sobic007G219601 Sobic007G094700--Sobic007G219601 Sobic007G094700--Sobic003G133600 Sobic007G094700--Sobic002G418300 Sobic007G094700--Sobic001G417700 Sobic007G094700--Sobic004G328200 Sobic007G094700--Sobic008G155700 Sobic009G008000 Sobic009G008000 Sobic007G094700--Sobic009G008000 Sobic007G094700--Sobic001G029300 Sobic009G145000--Sobic002G189500 Sobic009G145000--Sobic001G417700 Sobic009G145000--Sobic004G328200 Sobic009G145000--Sobic001G029300 Sobic009G145000--Sobic006G266400 Sobic004G190400 Sobic004G190400 Sobic009G145000--Sobic004G190400 Sobic009G145000--Sobic009G008000 Sobic009G145000--Sobic004G203150 Sobic009G145000--Sobic007G094700 Sobic002G101600--Sobic006G266400 Sobic002G101600--Sobic009G250300 Sobic002G015900 Sobic002G015900 Sobic002G101600--Sobic002G015900 Sobic002G101600--Sobic004G328200 Sobic002G101600--Sobic001G029300 Sobic004G054900 Sobic004G054900 Sobic002G101600--Sobic004G054900 Sobic010G177200 Sobic010G177200 Sobic002G101600--Sobic010G177200 Sobic001G337100 Sobic001G337100 Sobic002G101600--Sobic001G337100 Sobic001G163666 Sobic001G163666 Sobic002G101600--Sobic001G163666 Sobic006G266400--Sobic002G101600 Sobic006G266400--Sobic002G189500 Sobic010G242600 Sobic010G242600 Sobic006G266400--Sobic010G242600 Sobic006G266400--Sobic010G177200 Sobic006G266400--Sobic001G240600 Sobic006G266400--Sobic001G029300 Sobic006G266400--Sobic009G250300 Sobic006G266400--Sobic002G015900 Sobic006G266400--Sobic003G070400 Sobic001G136000--Sobic007G128000 Sobic001G136000--Sobic001G417700 Sobic009G060100 Sobic009G060100 Sobic001G136000--Sobic009G060100 Sobic010G129450 Sobic010G129450 Sobic001G136000--Sobic010G129450 Sobic001G136000--Sobic002G101600 Sobic001G136000--Sobic006G266400 Sobic007G082100 Sobic007G082100 Sobic001G136000--Sobic007G082100 Sobic001G136000--Sobic007G081100 Sobic001G136000--Sobic001G240600 Sobic002G189500--Sobic004G190400 Sobic002G189500--Sobic006G266400 Sobic002G189500--Sobic001G029300 Sobic002G189500--Sobic010G242600 Sobic002G189500--Sobic001G163666 Sobic002G189500--Sobic002G101600 Sobic002G189500--Sobic009G145000 Sobic002G189500--Sobic001G240600 Sobic002G189500--Sobic010G177200 Sobic001G240600--Sobic006G266400 Sobic001G240600--Sobic010G177200 Sobic001G240600--Sobic003G070400 Sobic009G068400 Sobic009G068400 Sobic001G240600--Sobic009G068400 Sobic007G197000 Sobic007G197000 Sobic001G240600--Sobic007G197000 Sobic004G273600 Sobic004G273600 Sobic001G240600--Sobic004G273600 Sobic009G207700 Sobic009G207700 Sobic001G240600--Sobic009G207700 Sobic006G236400 Sobic006G236400 Sobic001G240600--Sobic006G236400 Sobic001G240600--Sobic010G242600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.