Gene annotation
Transcriptome id Sobic.001G136000.4
Synonym Sb01g011870, AGO1
Functional annotation PINHEAD, putative, expressed
UniProt A0A1Z5S5I0
Pfam PF02171 PF16486 PF02170 PF08699 PF16487 PF16488
Panther DB PTHR22891:SF49 PTHR22891
NCBI CDD -
KEGG Orthology K11593; ELF2C, eukaryotic translation initiation factor 2C
Gene Ontology GO:0003676; nucleic acid binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G48410 : Stabilizer of iron transporter SufD / Polynucleotidyl transferase
RAP-DB (Rice) LOC_Os03g47820.1 : PINHEAD, putative, expressed
MaizeGDB (Corn) Zm00025a007607
Brachypodium KQK13776
Barley HORVU4Hr1G004030.7 , HORVU4Hr1G004030.6 , HORVU4Hr1G004030.5 , HORVU4Hr1G004030.3 , HORVU4Hr1G004030.2 , HORVU4Hr1G004030.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G128000 cytochrome P450, putative, expressed -
2 Sobic.001G417700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
3 Sobic.009G060100 alliin lyase precursor, putative, expressed K16903: L-tryptophan---pyruvate aminotransferase
4 Sobic.010G129450 - -
5 Sobic.002G101600 - -
6 Sobic.006G266400 B3 DNA binding domain containing protein, expressed -
7 Sobic.007G082100 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
8 Sobic.007G081100 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
9 Sobic.001G240600 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
10 Sobic.003G070400 expressed protein -
11 Sobic.002G080450 - -
12 Sobic.009G250300 Ser/Thr protein phosphatase family protein, putative, expressed -
13 Sobic.002G418300 vacuolar-sorting receptor precursor, putative, expressed -
14 Sobic.003G191200 expressed protein -
15 Sobic.007G074300 MATE efflux family protein, putative, expressed -
16 Sobic.004G054900 expressed protein -
17 Sobic.004G046700 OsFBLD3 - F-box, LRR and FBD domain containing protein, expressed -
18 Sobic.006G017900 DEFL55 - Defensin and Defensin-like DEFL family, expressed -
19 Sobic.010G123800 expressed protein -
20 Sobic.001G211700 MBTB33 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic001G136000 Sobic001G136000 Sobic007G128000 Sobic007G128000 Sobic001G136000--Sobic007G128000 Sobic001G417700 Sobic001G417700 Sobic001G136000--Sobic001G417700 Sobic009G060100 Sobic009G060100 Sobic001G136000--Sobic009G060100 Sobic010G129450 Sobic010G129450 Sobic001G136000--Sobic010G129450 Sobic002G101600 Sobic002G101600 Sobic001G136000--Sobic002G101600 Sobic006G266400 Sobic006G266400 Sobic001G136000--Sobic006G266400 Sobic007G082100 Sobic007G082100 Sobic001G136000--Sobic007G082100 Sobic007G081100 Sobic007G081100 Sobic001G136000--Sobic007G081100 Sobic001G240600 Sobic001G240600 Sobic001G136000--Sobic001G240600 Sobic007G128000--Sobic001G136000 Sobic007G128000--Sobic001G417700 Sobic007G128000--Sobic001G240600 Sobic007G128000--Sobic006G266400 Sobic007G128000--Sobic002G101600 Sobic003G070400 Sobic003G070400 Sobic007G128000--Sobic003G070400 Sobic009G250300 Sobic009G250300 Sobic007G128000--Sobic009G250300 Sobic007G128000--Sobic007G081100 Sobic002G189500 Sobic002G189500 Sobic007G128000--Sobic002G189500 Sobic001G417700--Sobic007G128000 Sobic002G418300 Sobic002G418300 Sobic001G417700--Sobic002G418300 Sobic007G094700 Sobic007G094700 Sobic001G417700--Sobic007G094700 Sobic009G145000 Sobic009G145000 Sobic001G417700--Sobic009G145000 Sobic001G417700--Sobic002G101600 Sobic001G417700--Sobic006G266400 Sobic001G417700--Sobic001G136000 Sobic001G417700--Sobic002G189500 Sobic001G417700--Sobic001G240600 Sobic005G058300 Sobic005G058300 Sobic009G060100--Sobic005G058300 Sobic010G123800 Sobic010G123800 Sobic009G060100--Sobic010G123800 Sobic007G081800 Sobic007G081800 Sobic009G060100--Sobic007G081800 Sobic009G060100--Sobic007G082100 Sobic004G046700 Sobic004G046700 Sobic009G060100--Sobic004G046700 Sobic006G224400 Sobic006G224400 Sobic009G060100--Sobic006G224400 Sobic007G167950 Sobic007G167950 Sobic009G060100--Sobic007G167950 Sobic005G087732 Sobic005G087732 Sobic009G060100--Sobic005G087732 Sobic007G110800 Sobic007G110800 Sobic009G060100--Sobic007G110800 Sobic010G129450--Sobic009G060100 Sobic010G129450--Sobic001G136000 Sobic005G058600 Sobic005G058600 Sobic010G129450--Sobic005G058600 Sobic010G129450--Sobic007G082100 Sobic003G133201 Sobic003G133201 Sobic010G129450--Sobic003G133201 Sobic003G191200 Sobic003G191200 Sobic010G129450--Sobic003G191200 Sobic010G129450--Sobic010G123800 Sobic010G129450--Sobic005G058300 Sobic010G129450--Sobic007G081100 Sobic002G101600--Sobic006G266400 Sobic002G101600--Sobic009G250300 Sobic002G015900 Sobic002G015900 Sobic002G101600--Sobic002G015900 Sobic004G328200 Sobic004G328200 Sobic002G101600--Sobic004G328200 Sobic001G029300 Sobic001G029300 Sobic002G101600--Sobic001G029300 Sobic004G054900 Sobic004G054900 Sobic002G101600--Sobic004G054900 Sobic010G177200 Sobic010G177200 Sobic002G101600--Sobic010G177200 Sobic001G337100 Sobic001G337100 Sobic002G101600--Sobic001G337100 Sobic001G163666 Sobic001G163666 Sobic002G101600--Sobic001G163666 Sobic006G266400--Sobic002G101600 Sobic006G266400--Sobic002G189500 Sobic010G242600 Sobic010G242600 Sobic006G266400--Sobic010G242600 Sobic006G266400--Sobic010G177200 Sobic006G266400--Sobic001G240600 Sobic006G266400--Sobic001G029300 Sobic006G266400--Sobic009G250300 Sobic006G266400--Sobic002G015900 Sobic006G266400--Sobic003G070400 Sobic007G082100--Sobic003G191200 Sobic007G082100--Sobic004G046700 Sobic001G211700 Sobic001G211700 Sobic007G082100--Sobic001G211700 Sobic006G017900 Sobic006G017900 Sobic007G082100--Sobic006G017900 Sobic007G082100--Sobic010G123800 Sobic002G182701 Sobic002G182701 Sobic007G082100--Sobic002G182701 Sobic007G082100--Sobic009G060100 Sobic007G031200 Sobic007G031200 Sobic007G082100--Sobic007G031200 Sobic007G082100--Sobic007G081800 Sobic002G204500 Sobic002G204500 Sobic007G081100--Sobic002G204500 Sobic007G081100--Sobic007G082100 Sobic007G081100--Sobic003G191200 Sobic007G081100--Sobic003G070400 Sobic007G081100--Sobic007G031200 Sobic004G100300 Sobic004G100300 Sobic007G081100--Sobic004G100300 Sobic007G081100--Sobic009G060100 Sobic007G081100--Sobic002G182701 Sobic007G081100--Sobic001G211700 Sobic001G240600--Sobic006G266400 Sobic001G240600--Sobic010G177200 Sobic001G240600--Sobic003G070400 Sobic009G068400 Sobic009G068400 Sobic001G240600--Sobic009G068400 Sobic007G197000 Sobic007G197000 Sobic001G240600--Sobic007G197000 Sobic004G273600 Sobic004G273600 Sobic001G240600--Sobic004G273600 Sobic009G207700 Sobic009G207700 Sobic001G240600--Sobic009G207700 Sobic006G236400 Sobic006G236400 Sobic001G240600--Sobic006G236400 Sobic001G240600--Sobic010G242600
Octagon: transcription factors


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