Gene annotation
Transcriptome id Sobic.002G414800.1
Synonym Sb02g042720
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5X5I7
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF310
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G18020 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os07g47720.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a015422
Brachypodium PNT74579 , PNT74580
Barley HORVU2Hr1G019150.1 , HORVU2Hr1G019150.2 , HORVU2Hr1G019150.3 , HORVU2Hr1G019150.4 , HORVU2Hr1G019150.5 , HORVU2Hr1G019150.6 , HORVU2Hr1G019150.7
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
2 Sobic.008G166100 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
3 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -
4 Sobic.006G265800 OsFBX154 - F-box domain containing protein, expressed -
5 Sobic.006G134500 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
6 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
7 Sobic.004G007400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
8 Sobic.001G387300 exostosin family domain containing protein, expressed -
9 Sobic.002G362500 expressed protein -
10 Sobic.003G175350 - -
11 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
12 Sobic.003G024100 MRH1, putative, expressed -
13 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
14 Sobic.004G038400 fruit bromelain precursor, putative, expressed -
15 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
16 Sobic.007G039200 MYB family transcription factor, putative, expressed -
17 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -
18 Sobic.003G349900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
19 Sobic.004G074600 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase


Gene co-expression network
sample Sobic002G414800 Sobic002G414800 Sobic001G384200 Sobic001G384200 Sobic002G414800--Sobic001G384200 Sobic008G166100 Sobic008G166100 Sobic002G414800--Sobic008G166100 Sobic001G280500 Sobic001G280500 Sobic002G414800--Sobic001G280500 Sobic006G265800 Sobic006G265800 Sobic002G414800--Sobic006G265800 Sobic006G134500 Sobic006G134500 Sobic002G414800--Sobic006G134500 Sobic001G400000 Sobic001G400000 Sobic002G414800--Sobic001G400000 Sobic004G007400 Sobic004G007400 Sobic002G414800--Sobic004G007400 Sobic001G387300 Sobic001G387300 Sobic002G414800--Sobic001G387300 Sobic002G362500 Sobic002G362500 Sobic002G414800--Sobic002G362500 Sobic003G024100 Sobic003G024100 Sobic001G384200--Sobic003G024100 Sobic001G340800 Sobic001G340800 Sobic001G384200--Sobic001G340800 Sobic001G384200--Sobic008G166100 Sobic009G178400 Sobic009G178400 Sobic001G384200--Sobic009G178400 Sobic001G370400 Sobic001G370400 Sobic001G384200--Sobic001G370400 Sobic003G244400 Sobic003G244400 Sobic001G384200--Sobic003G244400 Sobic001G432200 Sobic001G432200 Sobic001G384200--Sobic001G432200 Sobic003G175350 Sobic003G175350 Sobic001G384200--Sobic003G175350 Sobic007G039200 Sobic007G039200 Sobic001G384200--Sobic007G039200 Sobic008G166100--Sobic001G384200 Sobic008G166100--Sobic007G039200 Sobic008G166100--Sobic009G178400 Sobic001G322400 Sobic001G322400 Sobic008G166100--Sobic001G322400 Sobic008G166100--Sobic003G024100 Sobic009G202000 Sobic009G202000 Sobic008G166100--Sobic009G202000 Sobic008G166100--Sobic001G340800 Sobic008G166100--Sobic001G387300 Sobic008G166100--Sobic001G432200 Sobic001G280500--Sobic002G414800 Sobic001G149000 Sobic001G149000 Sobic001G280500--Sobic001G149000 Sobic005G063200 Sobic005G063200 Sobic001G280500--Sobic005G063200 Sobic001G280500--Sobic001G384200 Sobic001G280500--Sobic008G166100 Sobic008G022400 Sobic008G022400 Sobic001G280500--Sobic008G022400 Sobic010G160300 Sobic010G160300 Sobic001G280500--Sobic010G160300 Sobic001G424800 Sobic001G424800 Sobic001G280500--Sobic001G424800 Sobic001G280500--Sobic006G265800 Sobic006G265800--Sobic001G384200 Sobic006G265800--Sobic006G134500 Sobic006G265800--Sobic001G400000 Sobic009G163100 Sobic009G163100 Sobic006G265800--Sobic009G163100 Sobic009G201000 Sobic009G201000 Sobic006G265800--Sobic009G201000 Sobic006G265800--Sobic003G024100 Sobic008G156600 Sobic008G156600 Sobic006G265800--Sobic008G156600 Sobic006G265800--Sobic003G244400 Sobic008G007600 Sobic008G007600 Sobic006G265800--Sobic008G007600 Sobic006G134500--Sobic006G265800 Sobic006G134500--Sobic001G384200 Sobic006G134500--Sobic003G024100 Sobic004G194400 Sobic004G194400 Sobic006G134500--Sobic004G194400 Sobic006G134500--Sobic001G400000 Sobic004G113600 Sobic004G113600 Sobic006G134500--Sobic004G113600 Sobic006G134500--Sobic001G340800 Sobic006G134500--Sobic003G175350 Sobic006G071362 Sobic006G071362 Sobic006G134500--Sobic006G071362 Sobic001G400000--Sobic004G113600 Sobic001G112600 Sobic001G112600 Sobic001G400000--Sobic001G112600 Sobic001G400000--Sobic001G384200 Sobic005G050400 Sobic005G050400 Sobic001G400000--Sobic005G050400 Sobic001G400000--Sobic003G244400 Sobic001G400000--Sobic006G265800 Sobic001G400000--Sobic004G007400 Sobic008G055600 Sobic008G055600 Sobic001G400000--Sobic008G055600 Sobic001G400000--Sobic008G156600 Sobic004G007400--Sobic005G050400 Sobic004G007400--Sobic001G112600 Sobic009G087100 Sobic009G087100 Sobic004G007400--Sobic009G087100 Sobic004G007400--Sobic008G156600 Sobic002G176000 Sobic002G176000 Sobic004G007400--Sobic002G176000 Sobic003G441000 Sobic003G441000 Sobic004G007400--Sobic003G441000 Sobic004G358000 Sobic004G358000 Sobic004G007400--Sobic004G358000 Sobic004G046800 Sobic004G046800 Sobic004G007400--Sobic004G046800 Sobic002G364700 Sobic002G364700 Sobic004G007400--Sobic002G364700 Sobic001G387300--Sobic001G384200 Sobic001G387300--Sobic009G178400 Sobic001G387300--Sobic008G166100 Sobic001G387300--Sobic001G322400 Sobic001G387300--Sobic004G113600 Sobic001G387300--Sobic009G202000 Sobic001G387300--Sobic003G244400 Sobic001G072000 Sobic001G072000 Sobic001G387300--Sobic001G072000 Sobic001G387300--Sobic001G432200 Sobic002G362500--Sobic001G322400 Sobic002G362500--Sobic001G072000 Sobic002G362500--Sobic009G201000 Sobic002G362500--Sobic008G166100 Sobic002G362500--Sobic007G039200 Sobic002G362500--Sobic009G163100 Sobic002G362500--Sobic004G113600 Sobic002G362500--Sobic001G387300 Sobic004G074900 Sobic004G074900 Sobic002G362500--Sobic004G074900
Octagon: transcription factors


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