Gene annotation
Transcriptome id Sobic.006G265800.1
Synonym ATCDP1, ARC6H, CDP1, Sb06g032820, PARC6
Functional annotation OsFBX154 - F-box domain containing protein, expressed
UniProt C5YAH5
Pfam PF13355
Panther DB PTHR33925 PTHR33925:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19180 : paralog of ARC6
RAP-DB (Rice) LOC_Os04g57920.1 : OsFBX154 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009311
Brachypodium KQJ85272 , KQJ85273
Barley HORVU2Hr1G119920.8 , HORVU2Hr1G119920.2 , HORVU2Hr1G119920.3 , HORVU2Hr1G119920.1 , HORVU2Hr1G119920.6 , HORVU2Hr1G119920.9 , HORVU2Hr1G119920.4 , HORVU2Hr1G119920.7
Wheat TraesCS2A02G555400 , TraesCS2B02G588400 , TraesCS2D02G559100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
2 Sobic.006G134500 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
3 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
4 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
5 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -
6 Sobic.003G024100 MRH1, putative, expressed -
7 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
8 Sobic.003G244400 OsFBK1 - F-box domain and kelch repeat containing protein, expressed -
9 Sobic.008G007600 - -
10 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
11 Sobic.002G364700 ZOS7-11 - C2H2 zinc finger protein, expressed -
12 Sobic.008G071800 - -
13 Sobic.003G175350 - -
14 Sobic.008G166100 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
15 Sobic.001G387300 exostosin family domain containing protein, expressed -
16 Sobic.001G340800 exocyst complex component 6, putative, expressed -
17 Sobic.003G005700 AGC_PVPK_like_kin82y.4 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
18 Sobic.006G193400 regulatory protein, putative, expressed -
19 Sobic.009G178400 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
20 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein


Gene co-expression network
sample Sobic006G265800 Sobic006G265800 Sobic001G384200 Sobic001G384200 Sobic006G265800--Sobic001G384200 Sobic006G134500 Sobic006G134500 Sobic006G265800--Sobic006G134500 Sobic001G400000 Sobic001G400000 Sobic006G265800--Sobic001G400000 Sobic009G163100 Sobic009G163100 Sobic006G265800--Sobic009G163100 Sobic009G201000 Sobic009G201000 Sobic006G265800--Sobic009G201000 Sobic003G024100 Sobic003G024100 Sobic006G265800--Sobic003G024100 Sobic008G156600 Sobic008G156600 Sobic006G265800--Sobic008G156600 Sobic003G244400 Sobic003G244400 Sobic006G265800--Sobic003G244400 Sobic008G007600 Sobic008G007600 Sobic006G265800--Sobic008G007600 Sobic001G384200--Sobic003G024100 Sobic001G340800 Sobic001G340800 Sobic001G384200--Sobic001G340800 Sobic008G166100 Sobic008G166100 Sobic001G384200--Sobic008G166100 Sobic009G178400 Sobic009G178400 Sobic001G384200--Sobic009G178400 Sobic001G370400 Sobic001G370400 Sobic001G384200--Sobic001G370400 Sobic001G384200--Sobic003G244400 Sobic001G432200 Sobic001G432200 Sobic001G384200--Sobic001G432200 Sobic003G175350 Sobic003G175350 Sobic001G384200--Sobic003G175350 Sobic007G039200 Sobic007G039200 Sobic001G384200--Sobic007G039200 Sobic006G134500--Sobic006G265800 Sobic006G134500--Sobic001G384200 Sobic006G134500--Sobic003G024100 Sobic004G194400 Sobic004G194400 Sobic006G134500--Sobic004G194400 Sobic006G134500--Sobic001G400000 Sobic004G113600 Sobic004G113600 Sobic006G134500--Sobic004G113600 Sobic006G134500--Sobic001G340800 Sobic006G134500--Sobic003G175350 Sobic006G071362 Sobic006G071362 Sobic006G134500--Sobic006G071362 Sobic001G400000--Sobic004G113600 Sobic001G112600 Sobic001G112600 Sobic001G400000--Sobic001G112600 Sobic001G400000--Sobic001G384200 Sobic005G050400 Sobic005G050400 Sobic001G400000--Sobic005G050400 Sobic001G400000--Sobic003G244400 Sobic001G400000--Sobic006G265800 Sobic004G007400 Sobic004G007400 Sobic001G400000--Sobic004G007400 Sobic008G055600 Sobic008G055600 Sobic001G400000--Sobic008G055600 Sobic001G400000--Sobic008G156600 Sobic009G163100--Sobic008G156600 Sobic005G020600 Sobic005G020600 Sobic009G163100--Sobic005G020600 Sobic008G171900 Sobic008G171900 Sobic009G163100--Sobic008G171900 Sobic001G072000 Sobic001G072000 Sobic009G163100--Sobic001G072000 Sobic002G299500 Sobic002G299500 Sobic009G163100--Sobic002G299500 Sobic009G163100--Sobic005G050400 Sobic001G435700 Sobic001G435700 Sobic009G163100--Sobic001G435700 Sobic009G163100--Sobic001G112600 Sobic001G322400 Sobic001G322400 Sobic009G163100--Sobic001G322400 Sobic003G352900 Sobic003G352900 Sobic009G201000--Sobic003G352900 Sobic009G201000--Sobic008G166100 Sobic009G201000--Sobic001G384200 Sobic002G362500 Sobic002G362500 Sobic009G201000--Sobic002G362500 Sobic009G201000--Sobic001G072000 Sobic009G201000--Sobic006G265800 Sobic009G201000--Sobic001G322400 Sobic009G201000--Sobic007G039200 Sobic006G156400 Sobic006G156400 Sobic009G201000--Sobic006G156400 Sobic003G024100--Sobic001G340800 Sobic003G024100--Sobic001G384200 Sobic003G024100--Sobic001G370400 Sobic009G061500 Sobic009G061500 Sobic003G024100--Sobic009G061500 Sobic008G136601 Sobic008G136601 Sobic003G024100--Sobic008G136601 Sobic006G001100 Sobic006G001100 Sobic003G024100--Sobic006G001100 Sobic007G091400 Sobic007G091400 Sobic003G024100--Sobic007G091400 Sobic010G003200 Sobic010G003200 Sobic003G024100--Sobic010G003200 Sobic009G061601 Sobic009G061601 Sobic003G024100--Sobic009G061601 Sobic008G156600--Sobic009G163100 Sobic008G156600--Sobic005G050400 Sobic008G156600--Sobic001G072000 Sobic008G156600--Sobic001G112600 Sobic008G156600--Sobic005G020600 Sobic008G156600--Sobic008G171900 Sobic004G241300 Sobic004G241300 Sobic008G156600--Sobic004G241300 Sobic008G156600--Sobic004G007400 Sobic008G156600--Sobic001G322400 Sobic003G244400--Sobic001G370400 Sobic001G103100 Sobic001G103100 Sobic003G244400--Sobic001G103100 Sobic008G055200 Sobic008G055200 Sobic003G244400--Sobic008G055200 Sobic003G244400--Sobic001G432200 Sobic006G204500 Sobic006G204500 Sobic003G244400--Sobic006G204500 Sobic003G244400--Sobic001G340800 Sobic002G364700 Sobic002G364700 Sobic003G244400--Sobic002G364700 Sobic003G244400--Sobic007G091400 Sobic003G244400--Sobic010G003200 Sobic010G266600 Sobic010G266600 Sobic008G007600--Sobic010G266600 Sobic008G007600--Sobic002G364700 Sobic002G307400 Sobic002G307400 Sobic008G007600--Sobic002G307400 Sobic008G071800 Sobic008G071800 Sobic008G007600--Sobic008G071800 Sobic007G063800 Sobic007G063800 Sobic008G007600--Sobic007G063800 Sobic008G007600--Sobic009G061500 Sobic008G007600--Sobic006G204500 Sobic008G007600--Sobic002G299500 Sobic008G007600--Sobic001G340800
Octagon: transcription factors


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