Gene annotation
Transcriptome id Sobic.003G352900.2,Sobic.003G352900.1
Synonym ftsh10, Sb03g039540
Functional annotation OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed
UniProt C5XPQ2 , A0A1B6Q6Y5
Pfam PF06480 PF00004 PF01434
Panther DB PTHR23076 PTHR23076:SF69
NCBI CDD -
KEGG Orthology K08956; AFG3 family protein
Gene Ontology GO:0016021; integral component of membrane GO:0008270zinc ion binding GO:0005524ATP binding GO:0004222metalloendopeptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT1G07510 : FTSH protease 10
RAP-DB (Rice) LOC_Os01g62500.1 : OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed
MaizeGDB (Corn) Zm00025a037683
Brachypodium KQK05917 , PNT73170 , PNT73171 , PNT73172
Barley HORVU1Hr1G072490.9 , HORVU1Hr1G072490.8 , HORVU1Hr1G072490.5 , HORVU1Hr1G072490.4 , HORVU1Hr1G072490.7 , HORVU1Hr1G072490.6 , HORVU1Hr1G072490.3 , HORVU1Hr1G072490.2
Wheat TraesCS3A02G205300 , TraesCS3A02G205300 , TraesCS3D02G210100 , TraesCS3D02G210100 , TraesCS3B02G237400 , TraesCS3B02G237400 , TraesCS1B02G293000 , TraesCS1B02G293000 , TraesCS3A02G360800 , TraesCS3D02G354500 , TraesCS3D02G354500 , TraesCS3D02G354500 , TraesCS3B02G393200 , TraesCS3B02G393200 , TraesCS1D02G282900 , TraesCS1D02G282900 , TraesCS1A02G283800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
2 Sobic.002G299500 expressed protein -
3 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
4 Sobic.003G376900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed -
5 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -
6 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
7 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
8 Sobic.001G385300 auxin-independent growth promoter protein, putative, expressed -
9 Sobic.008G007600 - -
10 Sobic.004G038400 fruit bromelain precursor, putative, expressed -
11 Sobic.008G171900 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
12 Sobic.003G217800 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
13 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
14 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
15 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
16 Sobic.006G265800 OsFBX154 - F-box domain containing protein, expressed -
17 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
18 Sobic.010G058300 expressed protein -
19 Sobic.008G166100 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
20 Sobic.003G258100 dynamin family protein, putative, expressed -


Gene co-expression network
sample Sobic003G352900 Sobic003G352900 Sobic007G144100 Sobic007G144100 Sobic003G352900--Sobic007G144100 Sobic002G299500 Sobic002G299500 Sobic003G352900--Sobic002G299500 Sobic001G076600 Sobic001G076600 Sobic003G352900--Sobic001G076600 Sobic003G376900 Sobic003G376900 Sobic003G352900--Sobic003G376900 Sobic009G201000 Sobic009G201000 Sobic003G352900--Sobic009G201000 Sobic005G045800 Sobic005G045800 Sobic003G352900--Sobic005G045800 Sobic009G163100 Sobic009G163100 Sobic003G352900--Sobic009G163100 Sobic001G385300 Sobic001G385300 Sobic003G352900--Sobic001G385300 Sobic008G007600 Sobic008G007600 Sobic003G352900--Sobic008G007600 Sobic003G258100 Sobic003G258100 Sobic007G144100--Sobic003G258100 Sobic007G144100--Sobic003G352900 Sobic007G144100--Sobic001G076600 Sobic003G217800 Sobic003G217800 Sobic007G144100--Sobic003G217800 Sobic010G058300 Sobic010G058300 Sobic007G144100--Sobic010G058300 Sobic001G506400 Sobic001G506400 Sobic007G144100--Sobic001G506400 Sobic007G144100--Sobic002G299500 Sobic004G045632 Sobic004G045632 Sobic007G144100--Sobic004G045632 Sobic004G038400 Sobic004G038400 Sobic007G144100--Sobic004G038400 Sobic008G171900 Sobic008G171900 Sobic002G299500--Sobic008G171900 Sobic002G299500--Sobic003G376900 Sobic002G299500--Sobic009G163100 Sobic005G020600 Sobic005G020600 Sobic002G299500--Sobic005G020600 Sobic002G299500--Sobic008G007600 Sobic002G299500--Sobic003G352900 Sobic004G250800 Sobic004G250800 Sobic002G299500--Sobic004G250800 Sobic009G202000 Sobic009G202000 Sobic002G299500--Sobic009G202000 Sobic001G072000 Sobic001G072000 Sobic002G299500--Sobic001G072000 Sobic001G076600--Sobic003G352900 Sobic001G076600--Sobic007G144100 Sobic008G166100 Sobic008G166100 Sobic001G076600--Sobic008G166100 Sobic001G076600--Sobic004G038400 Sobic001G076600--Sobic002G299500 Sobic001G076600--Sobic004G045632 Sobic001G076600--Sobic003G258100 Sobic005G173700 Sobic005G173700 Sobic001G076600--Sobic005G173700 Sobic001G076600--Sobic003G376900 Sobic003G376900--Sobic002G299500 Sobic003G376900--Sobic009G163100 Sobic003G376900--Sobic003G352900 Sobic003G376900--Sobic008G171900 Sobic003G376900--Sobic001G385300 Sobic003G376900--Sobic005G020600 Sobic001G435700 Sobic001G435700 Sobic003G376900--Sobic001G435700 Sobic003G376900--Sobic005G045800 Sobic003G376900--Sobic001G072000 Sobic009G201000--Sobic003G352900 Sobic009G201000--Sobic008G166100 Sobic001G384200 Sobic001G384200 Sobic009G201000--Sobic001G384200 Sobic002G362500 Sobic002G362500 Sobic009G201000--Sobic002G362500 Sobic009G201000--Sobic001G072000 Sobic006G265800 Sobic006G265800 Sobic009G201000--Sobic006G265800 Sobic001G322400 Sobic001G322400 Sobic009G201000--Sobic001G322400 Sobic007G039200 Sobic007G039200 Sobic009G201000--Sobic007G039200 Sobic006G156400 Sobic006G156400 Sobic009G201000--Sobic006G156400 Sobic005G045800--Sobic003G352900 Sobic005G045800--Sobic003G376900 Sobic005G045800--Sobic001G385300 Sobic005G045800--Sobic002G299500 Sobic001G131900 Sobic001G131900 Sobic005G045800--Sobic001G131900 Sobic003G200000 Sobic003G200000 Sobic005G045800--Sobic003G200000 Sobic005G045800--Sobic008G171900 Sobic005G045800--Sobic009G163100 Sobic005G045800--Sobic007G144100 Sobic008G156600 Sobic008G156600 Sobic009G163100--Sobic008G156600 Sobic009G163100--Sobic005G020600 Sobic009G163100--Sobic008G171900 Sobic009G163100--Sobic001G072000 Sobic009G163100--Sobic002G299500 Sobic005G050400 Sobic005G050400 Sobic009G163100--Sobic005G050400 Sobic009G163100--Sobic001G435700 Sobic001G112600 Sobic001G112600 Sobic009G163100--Sobic001G112600 Sobic009G163100--Sobic001G322400 Sobic001G385300--Sobic003G376900 Sobic001G385300--Sobic002G299500 Sobic001G385300--Sobic003G352900 Sobic001G385300--Sobic009G163100 Sobic001G385300--Sobic008G171900 Sobic001G385300--Sobic005G045800 Sobic007G141600 Sobic007G141600 Sobic001G385300--Sobic007G141600 Sobic001G385300--Sobic005G020600 Sobic004G298600 Sobic004G298600 Sobic001G385300--Sobic004G298600 Sobic010G266600 Sobic010G266600 Sobic008G007600--Sobic010G266600 Sobic002G364700 Sobic002G364700 Sobic008G007600--Sobic002G364700 Sobic002G307400 Sobic002G307400 Sobic008G007600--Sobic002G307400 Sobic008G071800 Sobic008G071800 Sobic008G007600--Sobic008G071800 Sobic007G063800 Sobic007G063800 Sobic008G007600--Sobic007G063800 Sobic009G061500 Sobic009G061500 Sobic008G007600--Sobic009G061500 Sobic006G204500 Sobic006G204500 Sobic008G007600--Sobic006G204500 Sobic008G007600--Sobic002G299500 Sobic001G340800 Sobic001G340800 Sobic008G007600--Sobic001G340800
Octagon: transcription factors


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