Gene annotation
Transcriptome id Sobic.003G217800.1
Synonym RAN3, ATRAN3, Sb03g027660
Functional annotation ras-related protein, putative, expressed
UniProt C5XQZ2
Pfam PF08477
Panther DB PTHR24071
NCBI CDD KOG0096; GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily
KEGG Orthology K07936; GTP-binding nuclear protein Ran
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT5G55190 : RAN GTPase 3
RAP-DB (Rice) LOC_Os05g49890.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a044657
Brachypodium KQK08683
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
2 Sobic.003G258100 dynamin family protein, putative, expressed -
3 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
4 Sobic.002G299500 expressed protein -
5 Sobic.003G018000 expressed protein -
6 Sobic.001G485700 DAG protein, chloroplast precursor, putative, expressed -
7 Sobic.009G220700 - -
8 Sobic.004G062600 OsFBX154 - F-box domain containing protein, expressed -
9 Sobic.010G263400 expressed protein -
10 Sobic.009G005200 expressed protein -
11 Sobic.001G322400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
12 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
13 Sobic.010G073900 expressed protein -
14 Sobic.010G266600 calcium-dependent protein kinase CPK1 adapter protein 2, putative, expressed -
15 Sobic.001G506400 expressed protein -
16 Sobic.007G063800 - -
17 Sobic.008G007600 - -
18 Sobic.009G121200 stromal membrane-associated protein, putative, expressed K12486: stromal membrane-associated protein
19 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
20 Sobic.010G166800 amino acid transporter, putative, expressed -


Gene co-expression network
sample Sobic003G217800 Sobic003G217800 Sobic007G144100 Sobic007G144100 Sobic003G217800--Sobic007G144100 Sobic003G258100 Sobic003G258100 Sobic003G217800--Sobic003G258100 Sobic003G352900 Sobic003G352900 Sobic003G217800--Sobic003G352900 Sobic002G299500 Sobic002G299500 Sobic003G217800--Sobic002G299500 Sobic003G018000 Sobic003G018000 Sobic003G217800--Sobic003G018000 Sobic001G485700 Sobic001G485700 Sobic003G217800--Sobic001G485700 Sobic009G220700 Sobic009G220700 Sobic003G217800--Sobic009G220700 Sobic004G062600 Sobic004G062600 Sobic003G217800--Sobic004G062600 Sobic010G263400 Sobic010G263400 Sobic003G217800--Sobic010G263400 Sobic007G144100--Sobic003G258100 Sobic007G144100--Sobic003G352900 Sobic001G076600 Sobic001G076600 Sobic007G144100--Sobic001G076600 Sobic007G144100--Sobic003G217800 Sobic010G058300 Sobic010G058300 Sobic007G144100--Sobic010G058300 Sobic001G506400 Sobic001G506400 Sobic007G144100--Sobic001G506400 Sobic007G144100--Sobic002G299500 Sobic004G045632 Sobic004G045632 Sobic007G144100--Sobic004G045632 Sobic004G038400 Sobic004G038400 Sobic007G144100--Sobic004G038400 Sobic003G258100--Sobic007G144100 Sobic003G258100--Sobic003G217800 Sobic003G258100--Sobic010G263400 Sobic003G258100--Sobic001G076600 Sobic003G258100--Sobic003G352900 Sobic003G258100--Sobic001G506400 Sobic007G060100 Sobic007G060100 Sobic003G258100--Sobic007G060100 Sobic003G258100--Sobic002G299500 Sobic003G258100--Sobic003G018000 Sobic003G352900--Sobic007G144100 Sobic003G352900--Sobic002G299500 Sobic003G352900--Sobic001G076600 Sobic003G376900 Sobic003G376900 Sobic003G352900--Sobic003G376900 Sobic009G201000 Sobic009G201000 Sobic003G352900--Sobic009G201000 Sobic005G045800 Sobic005G045800 Sobic003G352900--Sobic005G045800 Sobic009G163100 Sobic009G163100 Sobic003G352900--Sobic009G163100 Sobic001G385300 Sobic001G385300 Sobic003G352900--Sobic001G385300 Sobic008G007600 Sobic008G007600 Sobic003G352900--Sobic008G007600 Sobic008G171900 Sobic008G171900 Sobic002G299500--Sobic008G171900 Sobic002G299500--Sobic003G376900 Sobic002G299500--Sobic009G163100 Sobic005G020600 Sobic005G020600 Sobic002G299500--Sobic005G020600 Sobic002G299500--Sobic008G007600 Sobic002G299500--Sobic003G352900 Sobic004G250800 Sobic004G250800 Sobic002G299500--Sobic004G250800 Sobic009G202000 Sobic009G202000 Sobic002G299500--Sobic009G202000 Sobic001G072000 Sobic001G072000 Sobic002G299500--Sobic001G072000 Sobic002G013550 Sobic002G013550 Sobic003G018000--Sobic002G013550 Sobic001G518900 Sobic001G518900 Sobic003G018000--Sobic001G518900 Sobic001G103600 Sobic001G103600 Sobic003G018000--Sobic001G103600 Sobic009G149100 Sobic009G149100 Sobic003G018000--Sobic009G149100 Sobic008G095500 Sobic008G095500 Sobic003G018000--Sobic008G095500 Sobic004G335400 Sobic004G335400 Sobic003G018000--Sobic004G335400 Sobic004G002700 Sobic004G002700 Sobic003G018000--Sobic004G002700 Sobic005G041500 Sobic005G041500 Sobic003G018000--Sobic005G041500 Sobic006G276600 Sobic006G276600 Sobic003G018000--Sobic006G276600 Sobic001G130600 Sobic001G130600 Sobic001G485700--Sobic001G130600 Sobic010G073900 Sobic010G073900 Sobic001G485700--Sobic010G073900 Sobic010G166800 Sobic010G166800 Sobic001G485700--Sobic010G166800 Sobic003G407700 Sobic003G407700 Sobic001G485700--Sobic003G407700 Sobic003G009000 Sobic003G009000 Sobic001G485700--Sobic003G009000 Sobic009G098700 Sobic009G098700 Sobic001G485700--Sobic009G098700 Sobic006G114100 Sobic006G114100 Sobic001G485700--Sobic006G114100 Sobic002G199800 Sobic002G199800 Sobic001G485700--Sobic002G199800 Sobic010G252100 Sobic010G252100 Sobic001G485700--Sobic010G252100 Sobic008G156600 Sobic008G156600 Sobic009G220700--Sobic008G156600 Sobic009G220700--Sobic009G163100 Sobic009G220700--Sobic001G072000 Sobic009G220700--Sobic003G217800 Sobic001G322400 Sobic001G322400 Sobic009G220700--Sobic001G322400 Sobic009G220700--Sobic001G485700 Sobic009G220700--Sobic010G073900 Sobic009G220700--Sobic003G352900 Sobic009G025700 Sobic009G025700 Sobic009G220700--Sobic009G025700 Sobic004G062600--Sobic003G217800 Sobic003G200000 Sobic003G200000 Sobic004G062600--Sobic003G200000 Sobic004G062600--Sobic010G263400 Sobic007G102300 Sobic007G102300 Sobic004G062600--Sobic007G102300 Sobic004G062600--Sobic005G045800 Sobic004G062600--Sobic003G258100 Sobic004G062600--Sobic003G352900 Sobic001G091701 Sobic001G091701 Sobic004G062600--Sobic001G091701 Sobic004G062600--Sobic002G299500 Sobic010G263400--Sobic007G060100 Sobic010G263400--Sobic003G258100 Sobic003G072700 Sobic003G072700 Sobic010G263400--Sobic003G072700 Sobic010G263400--Sobic007G144100 Sobic004G168900 Sobic004G168900 Sobic010G263400--Sobic004G168900 Sobic010G263400--Sobic002G299500 Sobic010G263400--Sobic003G217800 Sobic010G263400--Sobic004G038400 Sobic010G263400--Sobic004G250800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.