Gene annotation
Transcriptome id Sobic.001G506400.1
Synonym
Functional annotation expressed protein
UniProt C5WXZ1
Pfam PF12274
Panther DB PTHR23068 PTHR23068:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os05g44792.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.001G506400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
2 Sobic.003G258100 dynamin family protein, putative, expressed -
3 Sobic.001G034200 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
4 Sobic.004G038400 fruit bromelain precursor, putative, expressed -
5 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
6 Sobic.007G048900 OsFBX381 - F-box domain containing protein, expressed -
7 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
8 Sobic.004G168900 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
9 Sobic.010G038300 OsFBDUF33 - F-box and DUF domain containing protein, expressed -
10 Sobic.007G060100 expressed protein -
11 Sobic.007G063800 - -
12 Sobic.004G045632 - -
13 Sobic.001G218600 MATH domain containing protein, expressed -
14 Sobic.010G263400 expressed protein -
15 Sobic.003G217800 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
16 Sobic.010G058300 expressed protein -
17 Sobic.008G166100 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
18 Sobic.002G299500 expressed protein -
19 Sobic.009G002100 expressed protein -
20 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -


Gene co-expression network
sample Sobic001G506400 Sobic001G506400 Sobic007G144100 Sobic007G144100 Sobic001G506400--Sobic007G144100 Sobic003G258100 Sobic003G258100 Sobic001G506400--Sobic003G258100 Sobic001G034200 Sobic001G034200 Sobic001G506400--Sobic001G034200 Sobic004G038400 Sobic004G038400 Sobic001G506400--Sobic004G038400 Sobic001G076600 Sobic001G076600 Sobic001G506400--Sobic001G076600 Sobic007G048900 Sobic007G048900 Sobic001G506400--Sobic007G048900 Sobic003G352900 Sobic003G352900 Sobic001G506400--Sobic003G352900 Sobic004G168900 Sobic004G168900 Sobic001G506400--Sobic004G168900 Sobic010G038300 Sobic010G038300 Sobic001G506400--Sobic010G038300 Sobic007G144100--Sobic003G258100 Sobic007G144100--Sobic003G352900 Sobic007G144100--Sobic001G076600 Sobic003G217800 Sobic003G217800 Sobic007G144100--Sobic003G217800 Sobic010G058300 Sobic010G058300 Sobic007G144100--Sobic010G058300 Sobic007G144100--Sobic001G506400 Sobic002G299500 Sobic002G299500 Sobic007G144100--Sobic002G299500 Sobic004G045632 Sobic004G045632 Sobic007G144100--Sobic004G045632 Sobic007G144100--Sobic004G038400 Sobic003G258100--Sobic007G144100 Sobic003G258100--Sobic003G217800 Sobic010G263400 Sobic010G263400 Sobic003G258100--Sobic010G263400 Sobic003G258100--Sobic001G076600 Sobic003G258100--Sobic003G352900 Sobic003G258100--Sobic001G506400 Sobic007G060100 Sobic007G060100 Sobic003G258100--Sobic007G060100 Sobic003G258100--Sobic002G299500 Sobic003G018000 Sobic003G018000 Sobic003G258100--Sobic003G018000 Sobic002G080450 Sobic002G080450 Sobic001G034200--Sobic002G080450 Sobic010G266600 Sobic010G266600 Sobic001G034200--Sobic010G266600 Sobic001G034200--Sobic010G038300 Sobic001G034200--Sobic004G168900 Sobic002G123300 Sobic002G123300 Sobic001G034200--Sobic002G123300 Sobic010G129450 Sobic010G129450 Sobic001G034200--Sobic010G129450 Sobic007G063800 Sobic007G063800 Sobic001G034200--Sobic007G063800 Sobic005G202901 Sobic005G202901 Sobic001G034200--Sobic005G202901 Sobic001G136000 Sobic001G136000 Sobic001G034200--Sobic001G136000 Sobic005G173700 Sobic005G173700 Sobic004G038400--Sobic005G173700 Sobic009G048700 Sobic009G048700 Sobic004G038400--Sobic009G048700 Sobic004G038400--Sobic001G076600 Sobic004G038400--Sobic004G168900 Sobic003G005700 Sobic003G005700 Sobic004G038400--Sobic003G005700 Sobic004G038400--Sobic007G144100 Sobic002G243400 Sobic002G243400 Sobic004G038400--Sobic002G243400 Sobic008G056600 Sobic008G056600 Sobic004G038400--Sobic008G056600 Sobic009G002100 Sobic009G002100 Sobic004G038400--Sobic009G002100 Sobic001G076600--Sobic003G352900 Sobic001G076600--Sobic007G144100 Sobic008G166100 Sobic008G166100 Sobic001G076600--Sobic008G166100 Sobic001G076600--Sobic004G038400 Sobic001G076600--Sobic002G299500 Sobic001G076600--Sobic004G045632 Sobic001G076600--Sobic003G258100 Sobic001G076600--Sobic005G173700 Sobic003G376900 Sobic003G376900 Sobic001G076600--Sobic003G376900 Sobic007G048900--Sobic001G506400 Sobic007G048900--Sobic007G060100 Sobic007G048900--Sobic004G168900 Sobic010G263700 Sobic010G263700 Sobic007G048900--Sobic010G263700 Sobic007G048900--Sobic004G038400 Sobic007G048900--Sobic001G034200 Sobic007G048900--Sobic010G263400 Sobic003G342500 Sobic003G342500 Sobic007G048900--Sobic003G342500 Sobic007G048900--Sobic007G144100 Sobic003G352900--Sobic007G144100 Sobic003G352900--Sobic002G299500 Sobic003G352900--Sobic001G076600 Sobic003G352900--Sobic003G376900 Sobic009G201000 Sobic009G201000 Sobic003G352900--Sobic009G201000 Sobic005G045800 Sobic005G045800 Sobic003G352900--Sobic005G045800 Sobic009G163100 Sobic009G163100 Sobic003G352900--Sobic009G163100 Sobic001G385300 Sobic001G385300 Sobic003G352900--Sobic001G385300 Sobic008G007600 Sobic008G007600 Sobic003G352900--Sobic008G007600 Sobic004G168900--Sobic009G048700 Sobic004G168900--Sobic008G056600 Sobic004G168900--Sobic010G038300 Sobic002G097200 Sobic002G097200 Sobic004G168900--Sobic002G097200 Sobic001G417700 Sobic001G417700 Sobic004G168900--Sobic001G417700 Sobic003G211800 Sobic003G211800 Sobic004G168900--Sobic003G211800 Sobic009G145000 Sobic009G145000 Sobic004G168900--Sobic009G145000 Sobic004G168900--Sobic002G243400 Sobic006G266400 Sobic006G266400 Sobic004G168900--Sobic006G266400 Sobic010G038300--Sobic007G063800 Sobic010G038300--Sobic005G202901 Sobic004G014200 Sobic004G014200 Sobic010G038300--Sobic004G014200 Sobic002G060101 Sobic002G060101 Sobic010G038300--Sobic002G060101 Sobic006G070032 Sobic006G070032 Sobic010G038300--Sobic006G070032 Sobic008G029800 Sobic008G029800 Sobic010G038300--Sobic008G029800 Sobic010G038300--Sobic010G266600 Sobic006G204500 Sobic006G204500 Sobic010G038300--Sobic006G204500 Sobic008G020800 Sobic008G020800 Sobic010G038300--Sobic008G020800
Octagon: transcription factors


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