Gene annotation
Transcriptome id Sobic.001G218600.1,Sobic.001G218600.2,Sobic.001G218600.3
Synonym Sb01g019210
Functional annotation MATH domain containing protein, expressed
UniProt A0A1Z5S6S3 , C5WYE3
Pfam PF00917
Panther DB -
NCBI CDD KOG1987; Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G17380 : TRAF-like family protein
RAP-DB (Rice) LOC_Os10g33830.1 : MATH domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS7B02G041700
Populus -


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cDNA sequences
Sobic.001G218600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G090000 seven in absentia protein family protein, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
2 Sobic.003G027000 OsMADS3 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
3 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
4 Sobic.005G070301 - K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
5 Sobic.001G506400 expressed protein -
6 Sobic.003G044000 lipase class 3 family protein, putative, expressed -
7 Sobic.007G060100 expressed protein -
8 Sobic.010G157200 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
9 Sobic.010G263400 expressed protein -
10 Sobic.004G313400 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
11 Sobic.002G299200 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
12 Sobic.006G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule associated protein, putative, expressed -
13 Sobic.003G258100 dynamin family protein, putative, expressed -
14 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
15 Sobic.004G038400 fruit bromelain precursor, putative, expressed -
16 Sobic.004G203000 cytochrome P450, putative, expressed K15402: fatty acid omega-hydroxylase
17 Sobic.003G325600 expressed protein -
18 Sobic.007G048900 OsFBX381 - F-box domain containing protein, expressed -
19 Sobic.003G217800 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
20 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase


Gene co-expression network
sample Sobic001G218600 Sobic001G218600 Sobic003G090000 Sobic003G090000 Sobic001G218600--Sobic003G090000 Sobic003G027000 Sobic003G027000 Sobic001G218600--Sobic003G027000 Sobic003G396500 Sobic003G396500 Sobic001G218600--Sobic003G396500 Sobic005G070301 Sobic005G070301 Sobic001G218600--Sobic005G070301 Sobic001G506400 Sobic001G506400 Sobic001G218600--Sobic001G506400 Sobic003G044000 Sobic003G044000 Sobic001G218600--Sobic003G044000 Sobic007G060100 Sobic007G060100 Sobic001G218600--Sobic007G060100 Sobic010G157200 Sobic010G157200 Sobic001G218600--Sobic010G157200 Sobic010G263400 Sobic010G263400 Sobic001G218600--Sobic010G263400 Sobic003G090000--Sobic003G027000 Sobic003G090000--Sobic001G218600 Sobic002G299200 Sobic002G299200 Sobic003G090000--Sobic002G299200 Sobic006G215800 Sobic006G215800 Sobic003G090000--Sobic006G215800 Sobic003G090000--Sobic003G396500 Sobic004G313400 Sobic004G313400 Sobic003G090000--Sobic004G313400 Sobic003G090000--Sobic003G044000 Sobic003G090000--Sobic005G070301 Sobic003G090000--Sobic010G157200 Sobic003G027000--Sobic003G090000 Sobic003G027000--Sobic001G218600 Sobic003G027000--Sobic002G299200 Sobic003G027000--Sobic005G070301 Sobic003G027000--Sobic004G313400 Sobic003G027000--Sobic003G396500 Sobic003G027000--Sobic006G215800 Sobic003G027000--Sobic003G044000 Sobic009G152120 Sobic009G152120 Sobic003G027000--Sobic009G152120 Sobic003G396500--Sobic001G218600 Sobic003G325600 Sobic003G325600 Sobic003G396500--Sobic003G325600 Sobic003G396500--Sobic003G090000 Sobic003G396500--Sobic002G299200 Sobic003G396500--Sobic003G027000 Sobic003G396500--Sobic006G215800 Sobic006G152700 Sobic006G152700 Sobic003G396500--Sobic006G152700 Sobic003G396500--Sobic005G070301 Sobic003G396500--Sobic004G313400 Sobic005G070301--Sobic001G218600 Sobic005G070301--Sobic003G027000 Sobic005G070301--Sobic004G313400 Sobic007G144100 Sobic007G144100 Sobic005G070301--Sobic007G144100 Sobic005G070301--Sobic003G090000 Sobic005G171900 Sobic005G171900 Sobic005G070301--Sobic005G171900 Sobic003G258100 Sobic003G258100 Sobic005G070301--Sobic003G258100 Sobic003G001901 Sobic003G001901 Sobic005G070301--Sobic003G001901 Sobic005G070301--Sobic003G396500 Sobic001G506400--Sobic007G144100 Sobic001G506400--Sobic003G258100 Sobic001G034200 Sobic001G034200 Sobic001G506400--Sobic001G034200 Sobic004G038400 Sobic004G038400 Sobic001G506400--Sobic004G038400 Sobic001G076600 Sobic001G076600 Sobic001G506400--Sobic001G076600 Sobic007G048900 Sobic007G048900 Sobic001G506400--Sobic007G048900 Sobic003G352900 Sobic003G352900 Sobic001G506400--Sobic003G352900 Sobic004G168900 Sobic004G168900 Sobic001G506400--Sobic004G168900 Sobic010G038300 Sobic010G038300 Sobic001G506400--Sobic010G038300 Sobic003G044000--Sobic001G218600 Sobic003G044000--Sobic003G090000 Sobic003G044000--Sobic003G027000 Sobic003G044000--Sobic001G506400 Sobic001G131900 Sobic001G131900 Sobic003G044000--Sobic001G131900 Sobic003G044000--Sobic003G396500 Sobic009G066600 Sobic009G066600 Sobic003G044000--Sobic009G066600 Sobic003G044000--Sobic004G313400 Sobic003G293400 Sobic003G293400 Sobic003G044000--Sobic003G293400 Sobic007G060100--Sobic010G263400 Sobic007G060100--Sobic004G168900 Sobic007G060100--Sobic004G038400 Sobic007G060100--Sobic001G506400 Sobic007G060100--Sobic007G144100 Sobic007G060100--Sobic003G258100 Sobic007G060100--Sobic007G048900 Sobic007G060100--Sobic001G076600 Sobic007G060100--Sobic001G218600 Sobic010G157200--Sobic001G218600 Sobic010G157200--Sobic010G263400 Sobic009G168150 Sobic009G168150 Sobic010G157200--Sobic009G168150 Sobic010G157200--Sobic007G060100 Sobic010G157200--Sobic001G506400 Sobic010G157200--Sobic007G144100 Sobic010G157200--Sobic004G038400 Sobic010G157200--Sobic003G258100 Sobic010G058300 Sobic010G058300 Sobic010G157200--Sobic010G058300 Sobic010G263400--Sobic007G060100 Sobic010G263400--Sobic003G258100 Sobic003G072700 Sobic003G072700 Sobic010G263400--Sobic003G072700 Sobic010G263400--Sobic007G144100 Sobic010G263400--Sobic004G168900 Sobic002G299500 Sobic002G299500 Sobic010G263400--Sobic002G299500 Sobic003G217800 Sobic003G217800 Sobic010G263400--Sobic003G217800 Sobic010G263400--Sobic004G038400 Sobic004G250800 Sobic004G250800 Sobic010G263400--Sobic004G250800
Octagon: transcription factors


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