Gene annotation
Transcriptome id Sobic.002G299200.1,Sobic.002G299200.2
Synonym Sb02g032980, AGO1
Functional annotation PINHEAD, putative, expressed
UniProt C5X8G4
Pfam PF16487 PF16488 PF08699 PF16486 PF02170 PF02171
Panther DB PTHR22891 PTHR22891:SF39
NCBI CDD -
KEGG Orthology K11593; ELF2C, eukaryotic translation initiation factor 2C
Gene Ontology GO:0005515; protein binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G48410 : Stabilizer of iron transporter SufD / Polynucleotidyl transferase
RAP-DB (Rice) LOC_Os07g28850.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a014595 , Zm00025a047844
Brachypodium PNT75158 , PNT75157
Barley HORVU3Hr1G021290.27 , HORVU3Hr1G021290.20 , HORVU3Hr1G021290.21 , HORVU3Hr1G021290.22 , HORVU3Hr1G021290.23 , HORVU3Hr1G021290.28 , HORVU3Hr1G021290.29 , HORVU3Hr1G021290.19 , HORVU3Hr1G021290.18 , HORVU3Hr1G021290.11 , HORVU3Hr1G021290.10 , HORVU3Hr1G021290.13 , HORVU3Hr1G021290.12 , HORVU3Hr1G021290.15 , HORVU3Hr1G021290.14 , HORVU3Hr1G021290.17 , HORVU3Hr1G021290.16 , HORVU3Hr1G021290.9 , HORVU3Hr1G021290.8 , HORVU3Hr1G021290.5 , HORVU3Hr1G021290.4 , HORVU3Hr1G021290.7 , HORVU3Hr1G021290.6 , HORVU3Hr1G021290.1 , HORVU3Hr1G021290.3 , HORVU3Hr1G021290.2
Wheat TraesCS7D02G553200 , TraesCS3D02G118600 , TraesCS7D02G552900 , TraesCS3A02G116800 , TraesCS3B02G135800
Populus -


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cDNA sequences
Sobic.002G299200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G027000 OsMADS3 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
2 Sobic.003G090000 seven in absentia protein family protein, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
3 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
4 Sobic.009G152120 - -
5 Sobic.001G218600 MATH domain containing protein, expressed -
6 Sobic.006G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule associated protein, putative, expressed -
7 Sobic.002G259301 - K15382: SLC50A, solute carrier family 50 (sugar transporter)
8 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
9 Sobic.005G070301 - K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
10 Sobic.008G098700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio-family RNA binding repeat containing protein, expressed -
11 Sobic.003G044000 lipase class 3 family protein, putative, expressed -
12 Sobic.004G313400 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
13 Sobic.001G171001 - -
14 Sobic.001G500500 expressed protein -
15 Sobic.004G218000 SET domain containing protein, expressed -
16 Sobic.003G325600 expressed protein -
17 Sobic.005G212100 powdery mildew resistance protein PM3b, putative, expressed -
18 Sobic.003G142200 integral membrane protein DUF6 containing protein, expressed -
19 Sobic.006G152700 - -
20 Sobic.010G157200 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -


Gene co-expression network
sample Sobic002G299200 Sobic002G299200 Sobic003G027000 Sobic003G027000 Sobic002G299200--Sobic003G027000 Sobic003G090000 Sobic003G090000 Sobic002G299200--Sobic003G090000 Sobic003G396500 Sobic003G396500 Sobic002G299200--Sobic003G396500 Sobic009G152120 Sobic009G152120 Sobic002G299200--Sobic009G152120 Sobic001G218600 Sobic001G218600 Sobic002G299200--Sobic001G218600 Sobic006G215800 Sobic006G215800 Sobic002G299200--Sobic006G215800 Sobic002G259301 Sobic002G259301 Sobic002G299200--Sobic002G259301 Sobic001G288000 Sobic001G288000 Sobic002G299200--Sobic001G288000 Sobic005G070301 Sobic005G070301 Sobic002G299200--Sobic005G070301 Sobic003G027000--Sobic003G090000 Sobic003G027000--Sobic001G218600 Sobic003G027000--Sobic002G299200 Sobic003G027000--Sobic005G070301 Sobic004G313400 Sobic004G313400 Sobic003G027000--Sobic004G313400 Sobic003G027000--Sobic003G396500 Sobic003G027000--Sobic006G215800 Sobic003G044000 Sobic003G044000 Sobic003G027000--Sobic003G044000 Sobic003G027000--Sobic009G152120 Sobic003G090000--Sobic003G027000 Sobic003G090000--Sobic001G218600 Sobic003G090000--Sobic002G299200 Sobic003G090000--Sobic006G215800 Sobic003G090000--Sobic003G396500 Sobic003G090000--Sobic004G313400 Sobic003G090000--Sobic003G044000 Sobic003G090000--Sobic005G070301 Sobic010G157200 Sobic010G157200 Sobic003G090000--Sobic010G157200 Sobic003G396500--Sobic001G218600 Sobic003G325600 Sobic003G325600 Sobic003G396500--Sobic003G325600 Sobic003G396500--Sobic003G090000 Sobic003G396500--Sobic002G299200 Sobic003G396500--Sobic003G027000 Sobic003G396500--Sobic006G215800 Sobic006G152700 Sobic006G152700 Sobic003G396500--Sobic006G152700 Sobic003G396500--Sobic005G070301 Sobic003G396500--Sobic004G313400 Sobic009G152120--Sobic002G299200 Sobic009G152120--Sobic003G027000 Sobic009G152120--Sobic003G090000 Sobic009G152120--Sobic001G218600 Sobic008G098700 Sobic008G098700 Sobic009G152120--Sobic008G098700 Sobic009G152120--Sobic003G044000 Sobic009G152120--Sobic003G396500 Sobic009G152120--Sobic006G215800 Sobic009G152120--Sobic010G157200 Sobic001G218600--Sobic003G090000 Sobic001G218600--Sobic003G027000 Sobic001G218600--Sobic003G396500 Sobic001G218600--Sobic005G070301 Sobic001G506400 Sobic001G506400 Sobic001G218600--Sobic001G506400 Sobic001G218600--Sobic003G044000 Sobic007G060100 Sobic007G060100 Sobic001G218600--Sobic007G060100 Sobic001G218600--Sobic010G157200 Sobic010G263400 Sobic010G263400 Sobic001G218600--Sobic010G263400 Sobic006G215800--Sobic003G090000 Sobic006G215800--Sobic003G027000 Sobic006G215800--Sobic001G218600 Sobic006G215800--Sobic004G313400 Sobic006G215800--Sobic003G396500 Sobic006G215800--Sobic002G299200 Sobic006G215800--Sobic008G098700 Sobic006G215800--Sobic007G060100 Sobic006G215800--Sobic005G070301 Sobic002G259301--Sobic002G299200 Sobic003G142200 Sobic003G142200 Sobic002G259301--Sobic003G142200 Sobic007G193300 Sobic007G193300 Sobic002G259301--Sobic007G193300 Sobic005G164800 Sobic005G164800 Sobic002G259301--Sobic005G164800 Sobic002G259301--Sobic001G288000 Sobic007G205300 Sobic007G205300 Sobic002G259301--Sobic007G205300 Sobic001G287900 Sobic001G287900 Sobic002G259301--Sobic001G287900 Sobic003G217300 Sobic003G217300 Sobic002G259301--Sobic003G217300 Sobic002G259301--Sobic003G027000 Sobic001G137400 Sobic001G137400 Sobic001G288000--Sobic001G137400 Sobic001G137500 Sobic001G137500 Sobic001G288000--Sobic001G137500 Sobic003G091300 Sobic003G091300 Sobic001G288000--Sobic003G091300 Sobic002G258000 Sobic002G258000 Sobic001G288000--Sobic002G258000 Sobic001G288000--Sobic007G193300 Sobic001G288000--Sobic002G299200 Sobic003G006000 Sobic003G006000 Sobic001G288000--Sobic003G006000 Sobic002G178700 Sobic002G178700 Sobic001G288000--Sobic002G178700 Sobic001G419500 Sobic001G419500 Sobic001G288000--Sobic001G419500 Sobic005G070301--Sobic001G218600 Sobic005G070301--Sobic003G027000 Sobic005G070301--Sobic004G313400 Sobic007G144100 Sobic007G144100 Sobic005G070301--Sobic007G144100 Sobic005G070301--Sobic003G090000 Sobic005G171900 Sobic005G171900 Sobic005G070301--Sobic005G171900 Sobic003G258100 Sobic003G258100 Sobic005G070301--Sobic003G258100 Sobic003G001901 Sobic003G001901 Sobic005G070301--Sobic003G001901 Sobic005G070301--Sobic003G396500
Octagon: transcription factors


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