Gene annotation
Transcriptome id Sobic.004G218000.1,Sobic.004G218000.5,Sobic.004G218000.3
Synonym Sb04g026310, SDG31, SUVR4
Functional annotation SET domain containing protein, expressed
UniProt A0A194YR25 , A0A1Z5RP48 , A0A1Z5RNJ6
Pfam PF00856 PF05033 PF10440 PF05033 PF00856 PF10440
Panther DB PTHR22884 PTHR22884:SF366
NCBI CDD KOG1082; Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing
KEGG Orthology -
Gene Ontology GO:0018024; histone-lysine N-methyltransferase activity GO:0008270zinc ion binding GO:0005634nucleus GO:0005515protein binding GO:0005515protein binding GO:0018024histone-lysine N-methyltransferase activity GO:0008270zinc ion binding GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G04380 : SET-domain containing protein lysine methyltransferase family protein
RAP-DB (Rice) LOC_Os02g40770.2,LOC_Os02g40770.1 : SET domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032001
Brachypodium PNT77552 , PNT77553 , KQK22061 , PNT69087 , PNT69086 , PNT69085 , PNT69084 , KQK00377 , KQK00376
Barley HORVU6Hr1G057990.2 , HORVU6Hr1G057990.3 , HORVU6Hr1G057990.6 , HORVU6Hr1G057990.7 , HORVU6Hr1G057990.5
Wheat TraesCS6B02G255000 , TraesCS6D02G208400 , TraesCS6A02G226600 , TraesCS2B02G503200
Populus -


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cDNA sequences
Sobic.004G218000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G217300 zinc finger, C3HC4 type family protein, expressed -
2 Sobic.007G056900 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
3 Sobic.005G164800 pumilio-family RNA binding repeat domain containing protein, expressed -
4 Sobic.002G349000 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
5 Sobic.002G221100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.005G041900 - -
7 Sobic.003G022900 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
8 Sobic.009G042600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.010G180200 transcription factor S-II, central domain containing protein, expressed -
10 Sobic.001G132200 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
11 Sobic.006G143300 nuclear transport factor 2, putative, expressed -
12 Sobic.002G061800 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
13 Sobic.010G067200 receptor-like protein kinase precursor, putative, expressed -
14 Sobic.010G193700 expressed protein -
15 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
16 Sobic.002G238800 mago nashi, putative, expressed K12877: protein mago nashi
17 Sobic.005G172700 expressed protein -
18 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
19 Sobic.010G212700 tetraspanin family protein, putative, expressed -
20 Sobic.001G171100 expressed protein -


Gene co-expression network
sample Sobic004G218000 Sobic004G218000 Sobic003G217300 Sobic003G217300 Sobic004G218000--Sobic003G217300 Sobic007G056900 Sobic007G056900 Sobic004G218000--Sobic007G056900 Sobic005G164800 Sobic005G164800 Sobic004G218000--Sobic005G164800 Sobic002G349000 Sobic002G349000 Sobic004G218000--Sobic002G349000 Sobic002G221100 Sobic002G221100 Sobic004G218000--Sobic002G221100 Sobic005G041900 Sobic005G041900 Sobic004G218000--Sobic005G041900 Sobic003G022900 Sobic003G022900 Sobic004G218000--Sobic003G022900 Sobic009G042600 Sobic009G042600 Sobic004G218000--Sobic009G042600 Sobic010G180200 Sobic010G180200 Sobic004G218000--Sobic010G180200 Sobic003G217300--Sobic004G218000 Sobic003G217300--Sobic005G164800 Sobic003G217300--Sobic007G056900 Sobic010G067200 Sobic010G067200 Sobic003G217300--Sobic010G067200 Sobic003G217300--Sobic005G041900 Sobic003G217300--Sobic009G042600 Sobic002G259301 Sobic002G259301 Sobic003G217300--Sobic002G259301 Sobic003G217300--Sobic002G221100 Sobic007G193300 Sobic007G193300 Sobic003G217300--Sobic007G193300 Sobic007G056900--Sobic004G218000 Sobic007G056900--Sobic005G164800 Sobic007G056900--Sobic003G217300 Sobic002G061800 Sobic002G061800 Sobic007G056900--Sobic002G061800 Sobic006G143300 Sobic006G143300 Sobic007G056900--Sobic006G143300 Sobic007G056900--Sobic005G041900 Sobic001G132200 Sobic001G132200 Sobic007G056900--Sobic001G132200 Sobic007G056900--Sobic009G042600 Sobic006G062600 Sobic006G062600 Sobic007G056900--Sobic006G062600 Sobic005G164800--Sobic003G217300 Sobic005G164800--Sobic004G218000 Sobic001G171100 Sobic001G171100 Sobic005G164800--Sobic001G171100 Sobic001G377600 Sobic001G377600 Sobic005G164800--Sobic001G377600 Sobic005G164800--Sobic010G067200 Sobic003G027200 Sobic003G027200 Sobic005G164800--Sobic003G027200 Sobic005G164800--Sobic007G193300 Sobic008G072900 Sobic008G072900 Sobic005G164800--Sobic008G072900 Sobic007G191200 Sobic007G191200 Sobic005G164800--Sobic007G191200 Sobic002G349000--Sobic002G221100 Sobic001G324800 Sobic001G324800 Sobic002G349000--Sobic001G324800 Sobic002G349000--Sobic006G143300 Sobic002G349000--Sobic004G218000 Sobic002G354800 Sobic002G354800 Sobic002G349000--Sobic002G354800 Sobic004G014100 Sobic004G014100 Sobic002G349000--Sobic004G014100 Sobic009G156200 Sobic009G156200 Sobic002G349000--Sobic009G156200 Sobic001G425900 Sobic001G425900 Sobic002G349000--Sobic001G425900 Sobic004G262100 Sobic004G262100 Sobic002G349000--Sobic004G262100 Sobic002G221100--Sobic002G349000 Sobic002G212400 Sobic002G212400 Sobic002G221100--Sobic002G212400 Sobic002G221100--Sobic004G218000 Sobic003G057650 Sobic003G057650 Sobic002G221100--Sobic003G057650 Sobic002G360900 Sobic002G360900 Sobic002G221100--Sobic002G360900 Sobic002G221100--Sobic001G324800 Sobic002G221100--Sobic009G156200 Sobic003G042200 Sobic003G042200 Sobic002G221100--Sobic003G042200 Sobic005G109800 Sobic005G109800 Sobic002G221100--Sobic005G109800 Sobic005G041900--Sobic004G218000 Sobic005G041900--Sobic005G164800 Sobic005G041900--Sobic007G056900 Sobic005G041900--Sobic003G217300 Sobic010G193700 Sobic010G193700 Sobic005G041900--Sobic010G193700 Sobic002G174500 Sobic002G174500 Sobic005G041900--Sobic002G174500 Sobic010G109300 Sobic010G109300 Sobic005G041900--Sobic010G109300 Sobic005G041900--Sobic002G354800 Sobic003G027000 Sobic003G027000 Sobic005G041900--Sobic003G027000 Sobic003G022900--Sobic001G171100 Sobic006G097300 Sobic006G097300 Sobic003G022900--Sobic006G097300 Sobic001G171200 Sobic001G171200 Sobic003G022900--Sobic001G171200 Sobic003G022900--Sobic007G193300 Sobic003G022900--Sobic008G072900 Sobic010G212700 Sobic010G212700 Sobic003G022900--Sobic010G212700 Sobic006G066400 Sobic006G066400 Sobic003G022900--Sobic006G066400 Sobic001G137400 Sobic001G137400 Sobic003G022900--Sobic001G137400 Sobic003G022900--Sobic004G218000 Sobic009G042600--Sobic001G137400 Sobic009G042600--Sobic004G218000 Sobic001G457600 Sobic001G457600 Sobic009G042600--Sobic001G457600 Sobic009G042600--Sobic007G193300 Sobic009G042600--Sobic003G022900 Sobic009G042600--Sobic002G061800 Sobic009G042600--Sobic005G164800 Sobic009G042600--Sobic006G097300 Sobic009G042600--Sobic003G217300 Sobic003G402100 Sobic003G402100 Sobic010G180200--Sobic003G402100 Sobic001G053700 Sobic001G053700 Sobic010G180200--Sobic001G053700 Sobic010G180200--Sobic001G324800 Sobic010G180200--Sobic006G066400 Sobic010G180200--Sobic004G014100 Sobic001G394900 Sobic001G394900 Sobic010G180200--Sobic001G394900 Sobic007G023600 Sobic007G023600 Sobic010G180200--Sobic007G023600 Sobic010G180200--Sobic004G218000 Sobic010G180200--Sobic010G212700
Octagon: transcription factors


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