Gene annotation
Transcriptome id Sobic.009G042600.1,Sobic.009G042600.2
Synonym Sb09g003580
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5R0U5 , C5Z017
Pfam -
Panther DB PTHR33304 PTHR33304:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G43770 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os03g11490.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G137400 ankyrin, putative, expressed -
2 Sobic.004G218000 SET domain containing protein, expressed -
3 Sobic.001G457600 piwi domain containing protein, expressed -
4 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
5 Sobic.003G022900 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
6 Sobic.002G061800 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
7 Sobic.005G164800 pumilio-family RNA binding repeat domain containing protein, expressed -
8 Sobic.006G097300 F-box protein FBW2, putative, expressed -
9 Sobic.003G217300 zinc finger, C3HC4 type family protein, expressed -
10 Sobic.010G067200 receptor-like protein kinase precursor, putative, expressed -
11 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
12 Sobic.001G137500 ankyrin, putative, expressed -
13 Sobic.001G171200 expressed protein -
14 Sobic.008G072900 OsMADS13 - MADS-box family gene with MIKCc type-box, expressed -
15 Sobic.007G056900 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
16 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
17 Sobic.004G220200 expressed protein -
18 Sobic.001G377600 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
19 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
20 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G042600 Sobic009G042600 Sobic001G137400 Sobic001G137400 Sobic009G042600--Sobic001G137400 Sobic004G218000 Sobic004G218000 Sobic009G042600--Sobic004G218000 Sobic001G457600 Sobic001G457600 Sobic009G042600--Sobic001G457600 Sobic007G193300 Sobic007G193300 Sobic009G042600--Sobic007G193300 Sobic003G022900 Sobic003G022900 Sobic009G042600--Sobic003G022900 Sobic002G061800 Sobic002G061800 Sobic009G042600--Sobic002G061800 Sobic005G164800 Sobic005G164800 Sobic009G042600--Sobic005G164800 Sobic006G097300 Sobic006G097300 Sobic009G042600--Sobic006G097300 Sobic003G217300 Sobic003G217300 Sobic009G042600--Sobic003G217300 Sobic001G137500 Sobic001G137500 Sobic001G137400--Sobic001G137500 Sobic002G258000 Sobic002G258000 Sobic001G137400--Sobic002G258000 Sobic001G137400--Sobic007G193300 Sobic001G137400--Sobic001G457600 Sobic010G194600 Sobic010G194600 Sobic001G137400--Sobic010G194600 Sobic001G288000 Sobic001G288000 Sobic001G137400--Sobic001G288000 Sobic009G243000 Sobic009G243000 Sobic001G137400--Sobic009G243000 Sobic001G086400 Sobic001G086400 Sobic001G137400--Sobic001G086400 Sobic001G419500 Sobic001G419500 Sobic001G137400--Sobic001G419500 Sobic004G218000--Sobic003G217300 Sobic007G056900 Sobic007G056900 Sobic004G218000--Sobic007G056900 Sobic004G218000--Sobic005G164800 Sobic002G349000 Sobic002G349000 Sobic004G218000--Sobic002G349000 Sobic002G221100 Sobic002G221100 Sobic004G218000--Sobic002G221100 Sobic005G041900 Sobic005G041900 Sobic004G218000--Sobic005G041900 Sobic004G218000--Sobic003G022900 Sobic004G218000--Sobic009G042600 Sobic010G180200 Sobic010G180200 Sobic004G218000--Sobic010G180200 Sobic001G457600--Sobic001G137500 Sobic001G457600--Sobic010G194600 Sobic001G457600--Sobic001G419500 Sobic001G457600--Sobic002G258000 Sobic007G128200 Sobic007G128200 Sobic001G457600--Sobic007G128200 Sobic004G234600 Sobic004G234600 Sobic001G457600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic001G457600--Sobic009G063700 Sobic004G281000 Sobic004G281000 Sobic001G457600--Sobic004G281000 Sobic001G457600--Sobic007G193300 Sobic007G193300--Sobic001G137500 Sobic001G216400 Sobic001G216400 Sobic007G193300--Sobic001G216400 Sobic007G193300--Sobic001G419500 Sobic005G166100 Sobic005G166100 Sobic007G193300--Sobic005G166100 Sobic003G381100 Sobic003G381100 Sobic007G193300--Sobic003G381100 Sobic007G193300--Sobic007G128200 Sobic007G193300--Sobic004G234600 Sobic007G193300--Sobic001G457600 Sobic002G121900 Sobic002G121900 Sobic007G193300--Sobic002G121900 Sobic001G171100 Sobic001G171100 Sobic003G022900--Sobic001G171100 Sobic003G022900--Sobic006G097300 Sobic001G171200 Sobic001G171200 Sobic003G022900--Sobic001G171200 Sobic003G022900--Sobic007G193300 Sobic008G072900 Sobic008G072900 Sobic003G022900--Sobic008G072900 Sobic010G212700 Sobic010G212700 Sobic003G022900--Sobic010G212700 Sobic006G066400 Sobic006G066400 Sobic003G022900--Sobic006G066400 Sobic003G022900--Sobic001G137400 Sobic003G022900--Sobic004G218000 Sobic002G061800--Sobic001G457600 Sobic002G061800--Sobic007G056900 Sobic002G061800--Sobic009G042600 Sobic002G061800--Sobic002G258000 Sobic002G061800--Sobic004G218000 Sobic008G180400 Sobic008G180400 Sobic002G061800--Sobic008G180400 Sobic002G061800--Sobic003G217300 Sobic002G061800--Sobic001G137500 Sobic005G163500 Sobic005G163500 Sobic002G061800--Sobic005G163500 Sobic005G164800--Sobic003G217300 Sobic005G164800--Sobic004G218000 Sobic005G164800--Sobic001G171100 Sobic001G377600 Sobic001G377600 Sobic005G164800--Sobic001G377600 Sobic010G067200 Sobic010G067200 Sobic005G164800--Sobic010G067200 Sobic003G027200 Sobic003G027200 Sobic005G164800--Sobic003G027200 Sobic005G164800--Sobic007G193300 Sobic005G164800--Sobic008G072900 Sobic007G191200 Sobic007G191200 Sobic005G164800--Sobic007G191200 Sobic006G097300--Sobic003G381100 Sobic006G097300--Sobic005G166100 Sobic006G097300--Sobic004G234600 Sobic006G097300--Sobic007G193300 Sobic006G097300--Sobic001G171200 Sobic006G097300--Sobic001G216400 Sobic006G097300--Sobic008G072900 Sobic006G097300--Sobic007G128200 Sobic006G097300--Sobic004G281000 Sobic003G217300--Sobic004G218000 Sobic003G217300--Sobic005G164800 Sobic003G217300--Sobic007G056900 Sobic003G217300--Sobic010G067200 Sobic003G217300--Sobic005G041900 Sobic003G217300--Sobic009G042600 Sobic002G259301 Sobic002G259301 Sobic003G217300--Sobic002G259301 Sobic003G217300--Sobic002G221100 Sobic003G217300--Sobic007G193300
Octagon: transcription factors


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