Gene annotation
Transcriptome id Sobic.002G258000.1
Synonym SbMADS1, SEP3, MADS-domain transcription factor, AGL9, Sb02g029310
Functional annotation homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24. (PubMedID : 9065695)
OsMADS8 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5X4Q5 , O04069
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF167
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G24260 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os09g32948.1 : OsMADS8 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a021527 , Zm00025a032331 , Zm00025a001297 , Zm00025a049936 , Zm00025a047585 , Zm00025a043140 , Zm00025a005260 , Zm00025a005261 , Zm00025a053064 , Zm00025a008189 , Zm00025a052247 , Zm00025a014307 , Zm00025a016785 , Zm00025a022983 , Zm00025a048701
Brachypodium KQK15335 , KQK15334 , KQK15336 , KQK03211 , KQK03210 , KQK03213 , KQK03212 , KQK19480 , KQK13150 , KQK00790 , KQJ97593 , KQJ97594 , KQJ99121 , KQK22883 , KQJ90931
Barley HORVU0Hr1G032300.4 , HORVU0Hr1G032300.5 , HORVU6Hr1G066140.9 , HORVU6Hr1G066140.8 , HORVU6Hr1G066140.1 , HORVU6Hr1G066140.3 , HORVU6Hr1G066140.2 , HORVU6Hr1G066140.5 , HORVU6Hr1G066140.4 , HORVU6Hr1G066140.7 , HORVU6Hr1G066140.6 , HORVU0Hr1G032300.7 , HORVU5Hr1G095630.6 , HORVU5Hr1G095630.7 , HORVU5Hr1G095630.2 , HORVU5Hr1G095630.3 , HORVU5Hr1G095630.1 , HORVU5Hr1G095630.8 , HORVU5Hr1G095630.9 , HORVU0Hr1G032300.6 , HORVU0Hr1G032300.1 , HORVU0Hr1G032300.2 , HORVU0Hr1G032300.3 , HORVU5Hr1G076400.4 , HORVU5Hr1G076400.5 , HORVU5Hr1G076400.2 , HORVU5Hr1G076400.3 , HORVU5Hr1G076400.1 , HORVU7Hr1G025700.7 , HORVU7Hr1G025700.6 , HORVU7Hr1G025700.5 , HORVU7Hr1G025700.4 , HORVU7Hr1G025700.3 , HORVU7Hr1G025700.2 , HORVU7Hr1G025700.1 , HORVU7Hr1G025700.8 , HORVU7Hr1G054220.4 , HORVU7Hr1G054220.5 , HORVU7Hr1G054220.1 , HORVU7Hr1G054220.2 , HORVU7Hr1G054220.3
Wheat TraesCS6B02G286400 , TraesCS6B02G286400 , TraesCS6B02G286400 , TraesCS1D02G203300 , TraesCS1D02G203300 , TraesCS7D02G261600 , TraesCS5D02G294500 , TraesCS5A02G286800 , TraesCS7B02G020800 , TraesCS7A02G260900 , TraesCS7D02G120500 , TraesCS5B02G286100 , TraesCS5B02G286100 , TraesCS7B02G158600 , TraesCS7D02G120600 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS2B02G200800 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS5A02G391700 , TraesCS5A02G391700 , TraesCS5B02G396600 , TraesCS5B02G396600 , TraesCS7A02G122000 , TraesCS2A02G174300 , TraesCS2D02G181400 , TraesCS7D02G261600 , TraesCS7A02G260600 , TraesCS7A02G260600 , TraesCS7D02G261900 , TraesCS1A02G199600 , TraesCS1A02G199600
Populus -


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cDNA sequences
Sobic.002G258000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G137500 ankyrin, putative, expressed -
2 Sobic.001G457600 piwi domain containing protein, expressed -
3 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
4 Sobic.001G137400 ankyrin, putative, expressed -
5 Sobic.003G006000 expressed protein -
6 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
7 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
8 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
9 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -
10 Sobic.003G088600 transcription factor X1, putative, expressed -
11 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
12 Sobic.002G078900 agenet domain containing protein, expressed -
13 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
14 Sobic.003G091300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
15 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
16 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
17 Sobic.008G137700 XH domain containing protein, expressed -
18 Sobic.004G234600 expressed protein -
19 Sobic.003G300000 expressed protein -
20 Sobic.002G053350 - -


Gene co-expression network
sample Sobic002G258000 Sobic002G258000 Sobic001G137500 Sobic001G137500 Sobic002G258000--Sobic001G137500 Sobic001G457600 Sobic001G457600 Sobic002G258000--Sobic001G457600 Sobic001G419500 Sobic001G419500 Sobic002G258000--Sobic001G419500 Sobic001G137400 Sobic001G137400 Sobic002G258000--Sobic001G137400 Sobic003G006000 Sobic003G006000 Sobic002G258000--Sobic003G006000 Sobic009G243000 Sobic009G243000 Sobic002G258000--Sobic009G243000 Sobic007G193300 Sobic007G193300 Sobic002G258000--Sobic007G193300 Sobic010G194600 Sobic010G194600 Sobic002G258000--Sobic010G194600 Sobic002G178700 Sobic002G178700 Sobic002G258000--Sobic002G178700 Sobic001G137500--Sobic001G419500 Sobic001G137500--Sobic002G258000 Sobic001G137500--Sobic001G457600 Sobic001G137500--Sobic002G178700 Sobic001G137500--Sobic003G006000 Sobic001G137500--Sobic007G193300 Sobic001G137500--Sobic001G137400 Sobic001G137500--Sobic010G194600 Sobic003G088600 Sobic003G088600 Sobic001G137500--Sobic003G088600 Sobic001G457600--Sobic001G137500 Sobic001G457600--Sobic010G194600 Sobic001G457600--Sobic001G419500 Sobic001G457600--Sobic002G258000 Sobic007G128200 Sobic007G128200 Sobic001G457600--Sobic007G128200 Sobic004G234600 Sobic004G234600 Sobic001G457600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic001G457600--Sobic009G063700 Sobic004G281000 Sobic004G281000 Sobic001G457600--Sobic004G281000 Sobic001G457600--Sobic007G193300 Sobic001G419500--Sobic002G178700 Sobic001G419500--Sobic001G137500 Sobic001G216400 Sobic001G216400 Sobic001G419500--Sobic001G216400 Sobic001G419500--Sobic003G006000 Sobic001G419500--Sobic001G457600 Sobic001G419500--Sobic009G063700 Sobic001G419500--Sobic002G258000 Sobic001G419500--Sobic010G194600 Sobic009G075500 Sobic009G075500 Sobic001G419500--Sobic009G075500 Sobic001G137400--Sobic001G137500 Sobic001G137400--Sobic002G258000 Sobic001G137400--Sobic007G193300 Sobic001G137400--Sobic001G457600 Sobic001G137400--Sobic010G194600 Sobic001G288000 Sobic001G288000 Sobic001G137400--Sobic001G288000 Sobic001G137400--Sobic009G243000 Sobic001G086400 Sobic001G086400 Sobic001G137400--Sobic001G086400 Sobic001G137400--Sobic001G419500 Sobic003G006000--Sobic002G178700 Sobic003G006000--Sobic001G137500 Sobic003G006000--Sobic001G419500 Sobic006G271600 Sobic006G271600 Sobic003G006000--Sobic006G271600 Sobic002G078900 Sobic002G078900 Sobic003G006000--Sobic002G078900 Sobic003G006000--Sobic003G088600 Sobic003G006000--Sobic009G243000 Sobic003G006000--Sobic002G258000 Sobic003G006000--Sobic001G457600 Sobic007G033700 Sobic007G033700 Sobic009G243000--Sobic007G033700 Sobic009G243000--Sobic002G078900 Sobic009G243000--Sobic006G271600 Sobic001G071600 Sobic001G071600 Sobic009G243000--Sobic001G071600 Sobic002G205000 Sobic002G205000 Sobic009G243000--Sobic002G205000 Sobic009G243000--Sobic003G006000 Sobic003G046400 Sobic003G046400 Sobic009G243000--Sobic003G046400 Sobic001G137600 Sobic001G137600 Sobic009G243000--Sobic001G137600 Sobic009G243000--Sobic002G258000 Sobic007G193300--Sobic001G137500 Sobic007G193300--Sobic001G216400 Sobic007G193300--Sobic001G419500 Sobic005G166100 Sobic005G166100 Sobic007G193300--Sobic005G166100 Sobic003G381100 Sobic003G381100 Sobic007G193300--Sobic003G381100 Sobic007G193300--Sobic007G128200 Sobic007G193300--Sobic004G234600 Sobic007G193300--Sobic001G457600 Sobic002G121900 Sobic002G121900 Sobic007G193300--Sobic002G121900 Sobic010G194600--Sobic001G457600 Sobic010G194600--Sobic006G271600 Sobic010G194600--Sobic007G128200 Sobic010G194600--Sobic001G137500 Sobic010G194600--Sobic001G419500 Sobic010G194600--Sobic003G088600 Sobic010G194600--Sobic004G234600 Sobic010G194600--Sobic009G063700 Sobic003G300000 Sobic003G300000 Sobic010G194600--Sobic003G300000 Sobic002G178700--Sobic001G419500 Sobic002G178700--Sobic003G006000 Sobic002G178700--Sobic001G137500 Sobic002G178700--Sobic003G088600 Sobic002G178700--Sobic009G063700 Sobic002G178700--Sobic002G078900 Sobic001G459400 Sobic001G459400 Sobic002G178700--Sobic001G459400 Sobic008G137700 Sobic008G137700 Sobic002G178700--Sobic008G137700 Sobic002G178700--Sobic003G300000
Octagon: transcription factors


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