Gene annotation
Transcriptome id Sobic.002G053350.9,Sobic.002G053350.2,Sobic.002G053350.4,Sobic.002G053350.3,Sobic.002G053350.8,Sobic.002G053350.7,Sobic.002G053350.6,Sobic.002G053350.1,Sobic.002G053350.5
Synonym -
Functional annotation -
UniProt A0A1W0W2F6 , A0A1W0W2H2 , A0A1W0W2F0 , A0A1W0W2C8 , A0A1W0W2D9 , A0A1W0W2F9 , A0A1W0W2G4 , A0A1W0W2H6 , A0A1W0W2E1
Pfam PF14259 PF00076 PF00076
Panther DB PTHR24012 PTHR24012:SF362
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G44710 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g08320.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G234600 expressed protein -
2 Sobic.003G088600 transcription factor X1, putative, expressed -
3 Sobic.008G137700 XH domain containing protein, expressed -
4 Sobic.007G128200 expressed protein -
5 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
6 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
7 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
8 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
9 Sobic.001G137500 ankyrin, putative, expressed -
10 Sobic.007G043000 transcription factor X1, putative, expressed -
11 Sobic.001G137800 ankyrin, putative, expressed -
12 Sobic.003G374100 beta-galactosidase precursor, putative, expressed -
13 Sobic.002G121900 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
14 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
15 Sobic.001G457600 piwi domain containing protein, expressed -
16 Sobic.004G254100 pleiotropic drug resistance protein, putative, expressed -
17 Sobic.001G086400 OsMADS34 - MADS-box family gene with MIKCc type-box, expressed -
18 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
19 Sobic.006G112300 RNA recognition motif family protein, expressed -
20 Sobic.001G158100 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic002G053350 Sobic002G053350 Sobic004G234600 Sobic004G234600 Sobic002G053350--Sobic004G234600 Sobic003G088600 Sobic003G088600 Sobic002G053350--Sobic003G088600 Sobic008G137700 Sobic008G137700 Sobic002G053350--Sobic008G137700 Sobic007G128200 Sobic007G128200 Sobic002G053350--Sobic007G128200 Sobic001G216400 Sobic001G216400 Sobic002G053350--Sobic001G216400 Sobic001G419500 Sobic001G419500 Sobic002G053350--Sobic001G419500 Sobic010G194600 Sobic010G194600 Sobic002G053350--Sobic010G194600 Sobic007G193300 Sobic007G193300 Sobic002G053350--Sobic007G193300 Sobic001G137500 Sobic001G137500 Sobic002G053350--Sobic001G137500 Sobic004G234600--Sobic007G128200 Sobic004G234600--Sobic001G216400 Sobic009G063700 Sobic009G063700 Sobic004G234600--Sobic009G063700 Sobic004G234600--Sobic002G053350 Sobic001G457600 Sobic001G457600 Sobic004G234600--Sobic001G457600 Sobic004G234600--Sobic001G419500 Sobic004G234600--Sobic010G194600 Sobic001G158100 Sobic001G158100 Sobic004G234600--Sobic001G158100 Sobic010G183800 Sobic010G183800 Sobic004G234600--Sobic010G183800 Sobic003G088600--Sobic008G137700 Sobic003G088600--Sobic001G137500 Sobic003G088600--Sobic002G053350 Sobic003G088600--Sobic001G419500 Sobic003G088600--Sobic010G194600 Sobic006G271600 Sobic006G271600 Sobic003G088600--Sobic006G271600 Sobic003G006000 Sobic003G006000 Sobic003G088600--Sobic003G006000 Sobic009G219500 Sobic009G219500 Sobic003G088600--Sobic009G219500 Sobic002G178700 Sobic002G178700 Sobic003G088600--Sobic002G178700 Sobic008G137700--Sobic003G088600 Sobic008G137700--Sobic002G053350 Sobic008G137700--Sobic001G419500 Sobic008G137700--Sobic002G178700 Sobic008G137700--Sobic001G137500 Sobic003G300000 Sobic003G300000 Sobic008G137700--Sobic003G300000 Sobic008G137700--Sobic004G234600 Sobic008G137700--Sobic010G194600 Sobic008G137700--Sobic003G006000 Sobic007G128200--Sobic004G234600 Sobic007G128200--Sobic009G063700 Sobic007G128200--Sobic010G194600 Sobic007G128200--Sobic001G216400 Sobic007G128200--Sobic001G158100 Sobic007G128200--Sobic001G457600 Sobic004G056000 Sobic004G056000 Sobic007G128200--Sobic004G056000 Sobic005G166100 Sobic005G166100 Sobic007G128200--Sobic005G166100 Sobic007G043000 Sobic007G043000 Sobic007G128200--Sobic007G043000 Sobic009G075500 Sobic009G075500 Sobic001G216400--Sobic009G075500 Sobic001G216400--Sobic004G234600 Sobic001G216400--Sobic009G063700 Sobic001G216400--Sobic005G166100 Sobic001G216400--Sobic001G419500 Sobic003G381100 Sobic003G381100 Sobic001G216400--Sobic003G381100 Sobic006G213900 Sobic006G213900 Sobic001G216400--Sobic006G213900 Sobic001G216400--Sobic007G193300 Sobic001G216400--Sobic004G056000 Sobic001G419500--Sobic002G178700 Sobic001G419500--Sobic001G137500 Sobic001G419500--Sobic001G216400 Sobic001G419500--Sobic003G006000 Sobic001G419500--Sobic001G457600 Sobic001G419500--Sobic009G063700 Sobic002G258000 Sobic002G258000 Sobic001G419500--Sobic002G258000 Sobic001G419500--Sobic010G194600 Sobic001G419500--Sobic009G075500 Sobic010G194600--Sobic001G457600 Sobic010G194600--Sobic006G271600 Sobic010G194600--Sobic007G128200 Sobic010G194600--Sobic001G137500 Sobic010G194600--Sobic001G419500 Sobic010G194600--Sobic003G088600 Sobic010G194600--Sobic004G234600 Sobic010G194600--Sobic009G063700 Sobic010G194600--Sobic003G300000 Sobic007G193300--Sobic001G137500 Sobic007G193300--Sobic001G216400 Sobic007G193300--Sobic001G419500 Sobic007G193300--Sobic005G166100 Sobic007G193300--Sobic003G381100 Sobic007G193300--Sobic007G128200 Sobic007G193300--Sobic004G234600 Sobic007G193300--Sobic001G457600 Sobic002G121900 Sobic002G121900 Sobic007G193300--Sobic002G121900 Sobic001G137500--Sobic001G419500 Sobic001G137500--Sobic002G258000 Sobic001G137500--Sobic001G457600 Sobic001G137500--Sobic002G178700 Sobic001G137500--Sobic003G006000 Sobic001G137500--Sobic007G193300 Sobic001G137400 Sobic001G137400 Sobic001G137500--Sobic001G137400 Sobic001G137500--Sobic010G194600 Sobic001G137500--Sobic003G088600
Octagon: transcription factors


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