Gene annotation
Transcriptome id Sobic.001G086400.2,Sobic.001G086400.1
Synonym SEP1, Sb01g007780, AGL2
Functional annotation OsMADS34 - MADS-box family gene with MIKCc type-box, expressed
UniProt Q84KI2 , C5X093 , A0A1B6QI01
Pfam PF00319 PF01486
Panther DB PTHR11945 PTHR11945:SF162
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G15800 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os03g54170.1 : OsMADS34 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a021527 , Zm00025a016241 , Zm00025a026519 , Zm00025a032331 , Zm00025a049936 , Zm00025a008194 , Zm00025a000309 , Zm00025a053064 , Zm00025a016783 , Zm00025a000984
Brachypodium KQK13148 , KQK19480 , KQK23235 , KQK23234 , KQK23236 , KQK23233 , KQK22883
Barley HORVU4Hr1G077850.3 , HORVU4Hr1G077850.2 , HORVU4Hr1G077850.7 , HORVU4Hr1G077850.6 , HORVU4Hr1G077850.5 , HORVU4Hr1G077850.4 , HORVU4Hr1G077850.9 , HORVU4Hr1G077850.8 , HORVU5Hr1G095710.11 , HORVU5Hr1G095710.10 , HORVU5Hr1G095710.13 , HORVU5Hr1G095710.12 , HORVU5Hr1G095710.9 , HORVU5Hr1G095710.8 , HORVU5Hr1G095710.1 , HORVU5Hr1G095710.3 , HORVU5Hr1G095710.5 , HORVU5Hr1G095710.4 , HORVU5Hr1G095710.6 , HORVU5Hr1G076400.4 , HORVU5Hr1G076400.5 , HORVU5Hr1G076400.2 , HORVU5Hr1G076400.3 , HORVU5Hr1G076400.1 , HORVU4Hr1G067680.8 , HORVU4Hr1G067680.3 , HORVU4Hr1G067680.2 , HORVU4Hr1G067680.1 , HORVU4Hr1G067680.7 , HORVU4Hr1G067680.6 , HORVU4Hr1G067680.5 , HORVU4Hr1G067680.4 , HORVU4Hr1G077850.13 , HORVU4Hr1G077850.12 , HORVU4Hr1G077850.11 , HORVU4Hr1G077850.10 , HORVU4Hr1G077850.17 , HORVU4Hr1G077850.16 , HORVU4Hr1G077850.15 , HORVU4Hr1G077850.14 , HORVU7Hr1G025700.7 , HORVU7Hr1G025700.6 , HORVU7Hr1G025700.5 , HORVU7Hr1G025700.4 , HORVU7Hr1G025700.3 , HORVU7Hr1G025700.2 , HORVU7Hr1G025700.1 , HORVU7Hr1G025700.8 , HORVU7Hr1G054220.4 , HORVU7Hr1G054220.5 , HORVU7Hr1G054220.1 , HORVU7Hr1G054220.2 , HORVU7Hr1G054220.3
Wheat TraesCS5B02G396700 , TraesCS6B02G286400 , TraesCS6B02G286400 , TraesCS6B02G286400 , TraesCS7D02G261600 , TraesCS5D02G294500 , TraesCS5A02G286800 , TraesCS5D02G401700 , TraesCS7D02G120500 , TraesCS5B02G286100 , TraesCS5B02G286100 , TraesCS7B02G158600 , TraesCS7D02G120600 , TraesCS7B02G020900 , TraesCS5A02G391800 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS4D02G341700 , TraesCS4D02G301100 , TraesCS7D02G261600 , TraesCS7A02G260600 , TraesCS7A02G260600
Populus -


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cDNA sequences
Sobic.001G086400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G263000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
2 Sobic.003G207000 expressed protein -
3 Sobic.001G137800 ankyrin, putative, expressed -
4 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
5 Sobic.001G137400 ankyrin, putative, expressed -
6 Sobic.002G121900 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
7 Sobic.002G053350 - -
8 Sobic.007G128200 expressed protein -
9 Sobic.001G171200 expressed protein -
10 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
11 Sobic.006G097300 F-box protein FBW2, putative, expressed -
12 Sobic.006G228000 glycine-rich protein 2, putative -
13 Sobic.003G088600 transcription factor X1, putative, expressed -
14 Sobic.004G234600 expressed protein -
15 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
16 Sobic.007G043000 transcription factor X1, putative, expressed -
17 Sobic.004G220200 expressed protein -
18 Sobic.001G137600 ankyrin, putative, expressed -
19 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
20 Sobic.003G374100 beta-galactosidase precursor, putative, expressed -


Gene co-expression network
sample Sobic001G086400 Sobic001G086400 Sobic002G263000 Sobic002G263000 Sobic001G086400--Sobic002G263000 Sobic003G207000 Sobic003G207000 Sobic001G086400--Sobic003G207000 Sobic001G137800 Sobic001G137800 Sobic001G086400--Sobic001G137800 Sobic010G194600 Sobic010G194600 Sobic001G086400--Sobic010G194600 Sobic001G137400 Sobic001G137400 Sobic001G086400--Sobic001G137400 Sobic002G121900 Sobic002G121900 Sobic001G086400--Sobic002G121900 Sobic002G053350 Sobic002G053350 Sobic001G086400--Sobic002G053350 Sobic007G128200 Sobic007G128200 Sobic001G086400--Sobic007G128200 Sobic001G171200 Sobic001G171200 Sobic001G086400--Sobic001G171200 Sobic002G263000--Sobic001G086400 Sobic002G263000--Sobic001G171200 Sobic002G263000--Sobic002G121900 Sobic002G263000--Sobic001G137400 Sobic004G220200 Sobic004G220200 Sobic002G263000--Sobic004G220200 Sobic002G263000--Sobic010G194600 Sobic003G091550 Sobic003G091550 Sobic002G263000--Sobic003G091550 Sobic003G022900 Sobic003G022900 Sobic002G263000--Sobic003G022900 Sobic009G219500 Sobic009G219500 Sobic002G263000--Sobic009G219500 Sobic003G191600 Sobic003G191600 Sobic003G207000--Sobic003G191600 Sobic005G166100 Sobic005G166100 Sobic003G207000--Sobic005G166100 Sobic009G063700 Sobic009G063700 Sobic003G207000--Sobic009G063700 Sobic003G207000--Sobic001G086400 Sobic003G207000--Sobic010G194600 Sobic001G459400 Sobic001G459400 Sobic003G207000--Sobic001G459400 Sobic001G158100 Sobic001G158100 Sobic003G207000--Sobic001G158100 Sobic003G300000 Sobic003G300000 Sobic003G207000--Sobic003G300000 Sobic009G075500 Sobic009G075500 Sobic003G207000--Sobic009G075500 Sobic006G228000 Sobic006G228000 Sobic001G137800--Sobic006G228000 Sobic001G235200 Sobic001G235200 Sobic001G137800--Sobic001G235200 Sobic003G374100 Sobic003G374100 Sobic001G137800--Sobic003G374100 Sobic007G043000 Sobic007G043000 Sobic001G137800--Sobic007G043000 Sobic001G137800--Sobic002G121900 Sobic001G235100 Sobic001G235100 Sobic001G137800--Sobic001G235100 Sobic006G213900 Sobic006G213900 Sobic001G137800--Sobic006G213900 Sobic001G216400 Sobic001G216400 Sobic001G137800--Sobic001G216400 Sobic001G137800--Sobic007G128200 Sobic001G457600 Sobic001G457600 Sobic010G194600--Sobic001G457600 Sobic006G271600 Sobic006G271600 Sobic010G194600--Sobic006G271600 Sobic010G194600--Sobic007G128200 Sobic001G137500 Sobic001G137500 Sobic010G194600--Sobic001G137500 Sobic001G419500 Sobic001G419500 Sobic010G194600--Sobic001G419500 Sobic003G088600 Sobic003G088600 Sobic010G194600--Sobic003G088600 Sobic004G234600 Sobic004G234600 Sobic010G194600--Sobic004G234600 Sobic010G194600--Sobic009G063700 Sobic010G194600--Sobic003G300000 Sobic001G137400--Sobic001G137500 Sobic002G258000 Sobic002G258000 Sobic001G137400--Sobic002G258000 Sobic007G193300 Sobic007G193300 Sobic001G137400--Sobic007G193300 Sobic001G137400--Sobic001G457600 Sobic001G137400--Sobic010G194600 Sobic001G288000 Sobic001G288000 Sobic001G137400--Sobic001G288000 Sobic009G243000 Sobic009G243000 Sobic001G137400--Sobic009G243000 Sobic001G137400--Sobic001G086400 Sobic001G137400--Sobic001G419500 Sobic002G121900--Sobic007G043000 Sobic001G287900 Sobic001G287900 Sobic002G121900--Sobic001G287900 Sobic002G121900--Sobic001G137800 Sobic002G121900--Sobic007G128200 Sobic002G121900--Sobic001G235100 Sobic002G121900--Sobic007G193300 Sobic008G138200 Sobic008G138200 Sobic002G121900--Sobic008G138200 Sobic002G121900--Sobic003G374100 Sobic002G121900--Sobic001G171200 Sobic002G053350--Sobic004G234600 Sobic002G053350--Sobic003G088600 Sobic008G137700 Sobic008G137700 Sobic002G053350--Sobic008G137700 Sobic002G053350--Sobic007G128200 Sobic002G053350--Sobic001G216400 Sobic002G053350--Sobic001G419500 Sobic002G053350--Sobic010G194600 Sobic002G053350--Sobic007G193300 Sobic002G053350--Sobic001G137500 Sobic007G128200--Sobic004G234600 Sobic007G128200--Sobic009G063700 Sobic007G128200--Sobic010G194600 Sobic007G128200--Sobic001G216400 Sobic007G128200--Sobic001G158100 Sobic007G128200--Sobic001G457600 Sobic004G056000 Sobic004G056000 Sobic007G128200--Sobic004G056000 Sobic007G128200--Sobic005G166100 Sobic007G128200--Sobic007G043000 Sobic001G171200--Sobic004G220200 Sobic006G097300 Sobic006G097300 Sobic001G171200--Sobic006G097300 Sobic001G171200--Sobic007G128200 Sobic001G171200--Sobic004G234600 Sobic001G171200--Sobic002G121900 Sobic001G171200--Sobic007G193300 Sobic001G171200--Sobic010G194600 Sobic001G171200--Sobic001G086400 Sobic001G171200--Sobic001G457600
Octagon: transcription factors


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