Gene annotation
Transcriptome id Sobic.006G271600.1,Sobic.006G271600.2,Sobic.006G271600.5,Sobic.006G271600.3
Synonym Sb06g033290, PAB2, ATPAB2, PABP2
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5YAM7
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF276
NCBI CDD KOG0123; Polyadenylate-binding protein (RRM superfamily)
KEGG Orthology K13126; polyadenylate-binding protein
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G34110 : poly(A) binding protein 2
RAP-DB (Rice) LOC_Os04g58590.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU2Hr1G122920.1 , HORVU2Hr1G122920.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
2 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
3 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
4 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
5 Sobic.003G300000 expressed protein -
6 Sobic.002G078900 agenet domain containing protein, expressed -
7 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
8 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
9 Sobic.003G088600 transcription factor X1, putative, expressed -
10 Sobic.001G137600 ankyrin, putative, expressed -
11 Sobic.003G006000 expressed protein -
12 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
13 Sobic.009G048300 transcription factor X1, putative, expressed -
14 Sobic.001G457600 piwi domain containing protein, expressed -
15 Sobic.001G455900 "qGL3-2/qLGY3(Ortholog in rice:Yu et al., 2018/Liu et al., 2018)"(PubMedID : 31659846)@determinacy of the spikelet meristem and determining the identity of lemmas and paleas(PubMedID : 15208396)@OsMADS1 - MADS-box family gene with MIKCc type-box, expressed -
16 Sobic.009G219500 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
17 Sobic.001G137500 ankyrin, putative, expressed -
18 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
19 Sobic.006G112300 RNA recognition motif family protein, expressed -
20 Sobic.007G128200 expressed protein -


Gene co-expression network
sample Sobic006G271600 Sobic006G271600 Sobic001G071600 Sobic001G071600 Sobic006G271600--Sobic001G071600 Sobic010G194600 Sobic010G194600 Sobic006G271600--Sobic010G194600 Sobic003G117200 Sobic003G117200 Sobic006G271600--Sobic003G117200 Sobic009G243000 Sobic009G243000 Sobic006G271600--Sobic009G243000 Sobic003G300000 Sobic003G300000 Sobic006G271600--Sobic003G300000 Sobic002G078900 Sobic002G078900 Sobic006G271600--Sobic002G078900 Sobic003G046400 Sobic003G046400 Sobic006G271600--Sobic003G046400 Sobic010G183800 Sobic010G183800 Sobic006G271600--Sobic010G183800 Sobic003G088600 Sobic003G088600 Sobic006G271600--Sobic003G088600 Sobic001G071600--Sobic006G271600 Sobic001G071600--Sobic003G046400 Sobic001G071600--Sobic010G183800 Sobic001G071600--Sobic002G078900 Sobic009G048300 Sobic009G048300 Sobic001G071600--Sobic009G048300 Sobic001G071600--Sobic009G243000 Sobic001G456000 Sobic001G456000 Sobic001G071600--Sobic001G456000 Sobic001G071600--Sobic003G300000 Sobic004G281000 Sobic004G281000 Sobic001G071600--Sobic004G281000 Sobic001G457600 Sobic001G457600 Sobic010G194600--Sobic001G457600 Sobic010G194600--Sobic006G271600 Sobic007G128200 Sobic007G128200 Sobic010G194600--Sobic007G128200 Sobic001G137500 Sobic001G137500 Sobic010G194600--Sobic001G137500 Sobic001G419500 Sobic001G419500 Sobic010G194600--Sobic001G419500 Sobic010G194600--Sobic003G088600 Sobic004G234600 Sobic004G234600 Sobic010G194600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic010G194600--Sobic009G063700 Sobic010G194600--Sobic003G300000 Sobic003G117200--Sobic006G271600 Sobic003G117200--Sobic002G078900 Sobic003G117200--Sobic010G183800 Sobic003G117200--Sobic003G046400 Sobic003G117200--Sobic003G300000 Sobic003G117200--Sobic001G071600 Sobic003G117200--Sobic009G243000 Sobic003G006000 Sobic003G006000 Sobic003G117200--Sobic003G006000 Sobic003G117200--Sobic009G048300 Sobic007G033700 Sobic007G033700 Sobic009G243000--Sobic007G033700 Sobic009G243000--Sobic002G078900 Sobic009G243000--Sobic006G271600 Sobic009G243000--Sobic001G071600 Sobic002G205000 Sobic002G205000 Sobic009G243000--Sobic002G205000 Sobic009G243000--Sobic003G006000 Sobic009G243000--Sobic003G046400 Sobic001G137600 Sobic001G137600 Sobic009G243000--Sobic001G137600 Sobic002G258000 Sobic002G258000 Sobic009G243000--Sobic002G258000 Sobic003G300000--Sobic010G183800 Sobic001G459400 Sobic001G459400 Sobic003G300000--Sobic001G459400 Sobic003G092300 Sobic003G092300 Sobic003G300000--Sobic003G092300 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic009G075500 Sobic009G075500 Sobic003G300000--Sobic009G075500 Sobic003G300000--Sobic006G271600 Sobic003G300000--Sobic004G281000 Sobic003G300000--Sobic001G419500 Sobic002G078900--Sobic001G456000 Sobic002G078900--Sobic010G183800 Sobic002G078900--Sobic001G459400 Sobic002G078900--Sobic003G300000 Sobic001G106500 Sobic001G106500 Sobic002G078900--Sobic001G106500 Sobic002G078900--Sobic001G071600 Sobic001G459300 Sobic001G459300 Sobic002G078900--Sobic001G459300 Sobic002G078900--Sobic003G092300 Sobic002G078900--Sobic009G243000 Sobic001G455900 Sobic001G455900 Sobic003G046400--Sobic001G455900 Sobic003G046400--Sobic001G071600 Sobic003G046400--Sobic007G033700 Sobic003G046400--Sobic001G106500 Sobic003G046400--Sobic006G271600 Sobic003G046400--Sobic010G183800 Sobic006G163300 Sobic006G163300 Sobic003G046400--Sobic006G163300 Sobic010G070900 Sobic010G070900 Sobic003G046400--Sobic010G070900 Sobic003G046400--Sobic009G048300 Sobic010G183800--Sobic003G092300 Sobic010G183800--Sobic001G459400 Sobic010G183800--Sobic002G078900 Sobic010G183800--Sobic003G300000 Sobic010G183800--Sobic001G456000 Sobic010G183800--Sobic009G063700 Sobic010G183800--Sobic001G071600 Sobic001G158100 Sobic001G158100 Sobic010G183800--Sobic001G158100 Sobic010G183800--Sobic001G106500 Sobic008G137700 Sobic008G137700 Sobic003G088600--Sobic008G137700 Sobic003G088600--Sobic001G137500 Sobic002G053350 Sobic002G053350 Sobic003G088600--Sobic002G053350 Sobic003G088600--Sobic001G419500 Sobic003G088600--Sobic010G194600 Sobic003G088600--Sobic006G271600 Sobic003G088600--Sobic003G006000 Sobic009G219500 Sobic009G219500 Sobic003G088600--Sobic009G219500 Sobic002G178700 Sobic002G178700 Sobic003G088600--Sobic002G178700
Octagon: transcription factors


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