Gene annotation
Transcriptome id Sobic.006G112300.1
Synonym Sb06g019410
Functional annotation RNA recognition motif family protein, expressed
UniProt C5YA88
Pfam -
Panther DB PTHR24012 PTHR24012:SF425
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G13190 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g39250.1 : RNA recognition motif family protein, expressed
MaizeGDB (Corn) Zm00025a056257
Brachypodium KQJ83076
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G015100 expressed protein -
2 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
3 Sobic.003G300000 expressed protein -
4 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
5 Sobic.003G088600 transcription factor X1, putative, expressed -
6 Sobic.007G043000 transcription factor X1, putative, expressed -
7 Sobic.001G235100 MYB family transcription factor, putative, expressed -
8 Sobic.007G128200 expressed protein -
9 Sobic.001G137800 ankyrin, putative, expressed -
10 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
11 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
12 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
13 Sobic.002G053350 - -
14 Sobic.004G234600 expressed protein -
15 Sobic.008G137700 XH domain containing protein, expressed -
16 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
17 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
18 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
19 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
20 Sobic.004G254100 pleiotropic drug resistance protein, putative, expressed -


Gene co-expression network
sample Sobic006G112300 Sobic006G112300 Sobic006G015100 Sobic006G015100 Sobic006G112300--Sobic006G015100 Sobic010G194600 Sobic010G194600 Sobic006G112300--Sobic010G194600 Sobic003G300000 Sobic003G300000 Sobic006G112300--Sobic003G300000 Sobic006G271600 Sobic006G271600 Sobic006G112300--Sobic006G271600 Sobic003G088600 Sobic003G088600 Sobic006G112300--Sobic003G088600 Sobic007G043000 Sobic007G043000 Sobic006G112300--Sobic007G043000 Sobic001G235100 Sobic001G235100 Sobic006G112300--Sobic001G235100 Sobic007G128200 Sobic007G128200 Sobic006G112300--Sobic007G128200 Sobic001G137800 Sobic001G137800 Sobic006G112300--Sobic001G137800 Sobic001G459400 Sobic001G459400 Sobic006G015100--Sobic001G459400 Sobic006G015100--Sobic006G112300 Sobic003G092300 Sobic003G092300 Sobic006G015100--Sobic003G092300 Sobic010G183800 Sobic010G183800 Sobic006G015100--Sobic010G183800 Sobic001G274300 Sobic001G274300 Sobic006G015100--Sobic001G274300 Sobic001G459300 Sobic001G459300 Sobic006G015100--Sobic001G459300 Sobic006G015100--Sobic003G300000 Sobic001G106500 Sobic001G106500 Sobic006G015100--Sobic001G106500 Sobic009G075500 Sobic009G075500 Sobic006G015100--Sobic009G075500 Sobic001G457600 Sobic001G457600 Sobic010G194600--Sobic001G457600 Sobic010G194600--Sobic006G271600 Sobic010G194600--Sobic007G128200 Sobic001G137500 Sobic001G137500 Sobic010G194600--Sobic001G137500 Sobic001G419500 Sobic001G419500 Sobic010G194600--Sobic001G419500 Sobic010G194600--Sobic003G088600 Sobic004G234600 Sobic004G234600 Sobic010G194600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic010G194600--Sobic009G063700 Sobic010G194600--Sobic003G300000 Sobic003G300000--Sobic010G183800 Sobic003G300000--Sobic001G459400 Sobic003G300000--Sobic003G092300 Sobic002G078900 Sobic002G078900 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic003G300000--Sobic009G075500 Sobic003G300000--Sobic006G271600 Sobic004G281000 Sobic004G281000 Sobic003G300000--Sobic004G281000 Sobic003G300000--Sobic001G419500 Sobic001G071600 Sobic001G071600 Sobic006G271600--Sobic001G071600 Sobic006G271600--Sobic010G194600 Sobic003G117200 Sobic003G117200 Sobic006G271600--Sobic003G117200 Sobic009G243000 Sobic009G243000 Sobic006G271600--Sobic009G243000 Sobic006G271600--Sobic003G300000 Sobic006G271600--Sobic002G078900 Sobic003G046400 Sobic003G046400 Sobic006G271600--Sobic003G046400 Sobic006G271600--Sobic010G183800 Sobic006G271600--Sobic003G088600 Sobic008G137700 Sobic008G137700 Sobic003G088600--Sobic008G137700 Sobic003G088600--Sobic001G137500 Sobic002G053350 Sobic002G053350 Sobic003G088600--Sobic002G053350 Sobic003G088600--Sobic001G419500 Sobic003G088600--Sobic010G194600 Sobic003G088600--Sobic006G271600 Sobic003G006000 Sobic003G006000 Sobic003G088600--Sobic003G006000 Sobic009G219500 Sobic009G219500 Sobic003G088600--Sobic009G219500 Sobic002G178700 Sobic002G178700 Sobic003G088600--Sobic002G178700 Sobic007G043000--Sobic001G235100 Sobic002G121900 Sobic002G121900 Sobic007G043000--Sobic002G121900 Sobic004G254100 Sobic004G254100 Sobic007G043000--Sobic004G254100 Sobic008G138200 Sobic008G138200 Sobic007G043000--Sobic008G138200 Sobic007G043000--Sobic001G137800 Sobic001G216400 Sobic001G216400 Sobic007G043000--Sobic001G216400 Sobic003G381100 Sobic003G381100 Sobic007G043000--Sobic003G381100 Sobic007G043000--Sobic007G128200 Sobic003G063700 Sobic003G063700 Sobic007G043000--Sobic003G063700 Sobic001G235100--Sobic007G043000 Sobic001G235100--Sobic004G254100 Sobic001G235100--Sobic008G138200 Sobic001G235100--Sobic002G121900 Sobic001G235100--Sobic001G137800 Sobic006G213900 Sobic006G213900 Sobic001G235100--Sobic006G213900 Sobic001G235200 Sobic001G235200 Sobic001G235100--Sobic001G235200 Sobic001G235100--Sobic003G063700 Sobic001G235100--Sobic001G216400 Sobic007G128200--Sobic004G234600 Sobic007G128200--Sobic009G063700 Sobic007G128200--Sobic010G194600 Sobic007G128200--Sobic001G216400 Sobic001G158100 Sobic001G158100 Sobic007G128200--Sobic001G158100 Sobic007G128200--Sobic001G457600 Sobic004G056000 Sobic004G056000 Sobic007G128200--Sobic004G056000 Sobic005G166100 Sobic005G166100 Sobic007G128200--Sobic005G166100 Sobic007G128200--Sobic007G043000 Sobic006G228000 Sobic006G228000 Sobic001G137800--Sobic006G228000 Sobic001G137800--Sobic001G235200 Sobic003G374100 Sobic003G374100 Sobic001G137800--Sobic003G374100 Sobic001G137800--Sobic007G043000 Sobic001G137800--Sobic002G121900 Sobic001G137800--Sobic001G235100 Sobic001G137800--Sobic006G213900 Sobic001G137800--Sobic001G216400 Sobic001G137800--Sobic007G128200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.