Gene annotation
Transcriptome id Sobic.006G015100.1
Synonym Sb06g001470
Functional annotation expressed protein
UniProt A0A1B6PJI8
Pfam PF13968
Panther DB PTHR31325 PTHR31325:SF28
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G45540 : Protein of unknown function (DUF594)
RAP-DB (Rice) LOC_Os04g07110.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G015100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
2 Sobic.006G112300 RNA recognition motif family protein, expressed -
3 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
4 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
5 Sobic.001G274300 GASR1 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, putative -
6 Sobic.001G459300 - -
7 Sobic.003G300000 expressed protein -
8 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
9 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
10 Sobic.010G048600 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
11 Sobic.005G070700 - -
12 Sobic.002G239101 - -
13 Sobic.002G078900 agenet domain containing protein, expressed -
14 Sobic.005G070101 - -
15 Sobic.004G168000 pectinesterase inhibitor domain containing protein, putative, expressed -
16 Sobic.002G159000 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
17 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
18 Sobic.006G213900 OsMADS31 - MADS-box family gene with MIKCc type-box, expressed -
19 Sobic.009G048300 transcription factor X1, putative, expressed -
20 Sobic.006G134700 endoglucanase, putative, expressed -


Gene co-expression network
sample Sobic006G015100 Sobic006G015100 Sobic001G459400 Sobic001G459400 Sobic006G015100--Sobic001G459400 Sobic006G112300 Sobic006G112300 Sobic006G015100--Sobic006G112300 Sobic003G092300 Sobic003G092300 Sobic006G015100--Sobic003G092300 Sobic010G183800 Sobic010G183800 Sobic006G015100--Sobic010G183800 Sobic001G274300 Sobic001G274300 Sobic006G015100--Sobic001G274300 Sobic001G459300 Sobic001G459300 Sobic006G015100--Sobic001G459300 Sobic003G300000 Sobic003G300000 Sobic006G015100--Sobic003G300000 Sobic001G106500 Sobic001G106500 Sobic006G015100--Sobic001G106500 Sobic009G075500 Sobic009G075500 Sobic006G015100--Sobic009G075500 Sobic001G459400--Sobic003G092300 Sobic001G459400--Sobic001G459300 Sobic005G070700 Sobic005G070700 Sobic001G459400--Sobic005G070700 Sobic001G459400--Sobic010G183800 Sobic010G048600 Sobic010G048600 Sobic001G459400--Sobic010G048600 Sobic001G459400--Sobic009G075500 Sobic002G078900 Sobic002G078900 Sobic001G459400--Sobic002G078900 Sobic009G063700 Sobic009G063700 Sobic001G459400--Sobic009G063700 Sobic001G459400--Sobic006G015100 Sobic006G112300--Sobic006G015100 Sobic010G194600 Sobic010G194600 Sobic006G112300--Sobic010G194600 Sobic006G112300--Sobic003G300000 Sobic006G271600 Sobic006G271600 Sobic006G112300--Sobic006G271600 Sobic003G088600 Sobic003G088600 Sobic006G112300--Sobic003G088600 Sobic007G043000 Sobic007G043000 Sobic006G112300--Sobic007G043000 Sobic001G235100 Sobic001G235100 Sobic006G112300--Sobic001G235100 Sobic007G128200 Sobic007G128200 Sobic006G112300--Sobic007G128200 Sobic001G137800 Sobic001G137800 Sobic006G112300--Sobic001G137800 Sobic003G092300--Sobic001G459400 Sobic003G092300--Sobic010G183800 Sobic003G092300--Sobic001G459300 Sobic003G092300--Sobic001G106500 Sobic003G092300--Sobic003G300000 Sobic003G092300--Sobic010G048600 Sobic003G092300--Sobic009G075500 Sobic001G158100 Sobic001G158100 Sobic003G092300--Sobic001G158100 Sobic003G092300--Sobic005G070700 Sobic010G183800--Sobic003G092300 Sobic010G183800--Sobic001G459400 Sobic010G183800--Sobic002G078900 Sobic010G183800--Sobic003G300000 Sobic001G456000 Sobic001G456000 Sobic010G183800--Sobic001G456000 Sobic010G183800--Sobic009G063700 Sobic001G071600 Sobic001G071600 Sobic010G183800--Sobic001G071600 Sobic010G183800--Sobic001G158100 Sobic010G183800--Sobic001G106500 Sobic001G274300--Sobic005G070700 Sobic001G274300--Sobic001G459300 Sobic001G274300--Sobic010G048600 Sobic001G274300--Sobic001G459400 Sobic001G274300--Sobic001G106500 Sobic001G274300--Sobic006G015100 Sobic001G274300--Sobic001G456000 Sobic001G274300--Sobic003G092300 Sobic001G274300--Sobic002G078900 Sobic001G459300--Sobic005G070700 Sobic001G459300--Sobic010G048600 Sobic001G459300--Sobic001G459400 Sobic001G459300--Sobic001G106500 Sobic001G459300--Sobic001G274300 Sobic001G459300--Sobic001G456000 Sobic001G459300--Sobic003G092300 Sobic001G459300--Sobic002G078900 Sobic001G459300--Sobic010G183800 Sobic003G300000--Sobic010G183800 Sobic003G300000--Sobic001G459400 Sobic003G300000--Sobic003G092300 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic003G300000--Sobic009G075500 Sobic003G300000--Sobic006G271600 Sobic004G281000 Sobic004G281000 Sobic003G300000--Sobic004G281000 Sobic001G419500 Sobic001G419500 Sobic003G300000--Sobic001G419500 Sobic001G106500--Sobic001G459300 Sobic001G106500--Sobic010G048600 Sobic001G106500--Sobic003G092300 Sobic001G106500--Sobic001G456000 Sobic001G106500--Sobic005G070700 Sobic003G046400 Sobic003G046400 Sobic001G106500--Sobic003G046400 Sobic001G106500--Sobic002G078900 Sobic001G106500--Sobic001G459400 Sobic001G106500--Sobic010G183800 Sobic009G075500--Sobic001G459400 Sobic001G216400 Sobic001G216400 Sobic009G075500--Sobic001G216400 Sobic009G075500--Sobic009G063700 Sobic009G075500--Sobic003G092300 Sobic002G239101 Sobic002G239101 Sobic009G075500--Sobic002G239101 Sobic006G213900 Sobic006G213900 Sobic009G075500--Sobic006G213900 Sobic009G075500--Sobic001G158100 Sobic009G075500--Sobic003G300000 Sobic004G056000 Sobic004G056000 Sobic009G075500--Sobic004G056000
Octagon: transcription factors


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